DG783_ARATH
ID DG783_ARATH Reviewed; 293 AA.
AC F4JCQ3; Q9STT0;
DT 04-FEB-2015, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 03-AUG-2022, entry version 62.
DE RecName: Full=Putative DNA glycosylase At3g47830 {ECO:0000305};
DE EC=3.2.2.- {ECO:0000305};
GN OrderedLocusNames=At3g47830 {ECO:0000312|Araport:AT3G47830};
GN ORFNames=T23J7.160 {ECO:0000312|EMBL:CAB41866.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- SIMILARITY: Belongs to the DNA glycosylase family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB41866.1; Type=Erroneous gene model prediction; Note=The predicted gene At3g47830 has been split into 2 genes: At3g47830 and At3g47833.; Evidence={ECO:0000305};
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DR EMBL; AL049746; CAB41866.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE78335.1; -; Genomic_DNA.
DR PIR; T07722; T07722.
DR RefSeq; NP_566893.1; NM_114651.2.
DR AlphaFoldDB; F4JCQ3; -.
DR SMR; F4JCQ3; -.
DR STRING; 3702.AT3G47830.1; -.
DR PaxDb; F4JCQ3; -.
DR PRIDE; F4JCQ3; -.
DR ProteomicsDB; 224211; -.
DR EnsemblPlants; AT3G47830.1; AT3G47830.1; AT3G47830.
DR GeneID; 823937; -.
DR Gramene; AT3G47830.1; AT3G47830.1; AT3G47830.
DR KEGG; ath:AT3G47830; -.
DR Araport; AT3G47830; -.
DR TAIR; locus:2100382; AT3G47830.
DR eggNOG; ENOG502QRUG; Eukaryota.
DR HOGENOM; CLU_012862_9_1_1; -.
DR InParanoid; F4JCQ3; -.
DR OMA; LHVLMVG; -.
DR OrthoDB; 1280721at2759; -.
DR PRO; PR:F4JCQ3; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; F4JCQ3; baseline and differential.
DR GO; GO:0019104; F:DNA N-glycosylase activity; IEA:UniProt.
DR GO; GO:0006284; P:base-excision repair; IEA:InterPro.
DR CDD; cd00056; ENDO3c; 1.
DR Gene3D; 1.10.1670.10; -; 1.
DR InterPro; IPR011257; DNA_glycosylase.
DR InterPro; IPR003265; HhH-GPD_domain.
DR InterPro; IPR023170; HhH_base_excis_C.
DR Pfam; PF00730; HhH-GPD; 1.
DR SMART; SM00478; ENDO3c; 1.
DR SUPFAM; SSF48150; SSF48150; 1.
PE 3: Inferred from homology;
KW Glycosidase; Hydrolase; Reference proteome.
FT CHAIN 1..293
FT /note="Putative DNA glycosylase At3g47830"
FT /id="PRO_0000431761"
FT REGION 1..34
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT ACT_SITE 196
FT /note="Schiff-base intermediate with DNA"
FT /evidence="ECO:0000250|UniProtKB:O15527"
FT BINDING 108
FT /ligand="DNA"
FT /ligand_id="ChEBI:CHEBI:16991"
FT /evidence="ECO:0000250|UniProtKB:O15527"
FT BINDING 151
FT /ligand="DNA"
FT /ligand_id="ChEBI:CHEBI:16991"
FT /evidence="ECO:0000250|UniProtKB:O15527"
FT BINDING 216
FT /ligand="DNA"
FT /ligand_id="ChEBI:CHEBI:16991"
FT /evidence="ECO:0000250|UniProtKB:O15527"
FT BINDING 232
FT /ligand="DNA"
FT /ligand_id="ChEBI:CHEBI:16991"
FT /evidence="ECO:0000250|UniProtKB:O15527"
SQ SEQUENCE 293 AA; 32967 MW; 0C6352FF8C67BA25 CRC64;
MSKAQKRKRL NKYDGESKTP ANKSTVDGGN PYPTLLRPTA EECRDVRDAL LSLHGFPPEF
ANYRRQRLRS FSAVDDHDTQ CNLKSETLNE TEEESVLDGL VKILLSQNTT ESNSQRAFAS
LKATFPKWDD VLNAESKSIE NAIRCGGLAP KKAVCIKNIL NRLQNERGRL CLEYLRGLSV
EEVKTELSHF KGVGPKTVSC VLMFNLQHND FPVDTHVFEI AKALGWVPKT ADRNKTYVHL
NRKIPDELKF DLNCLLYTHG KICSNCKKNV AKPKAKVASP DDCPLVGFYD LIV
