DJ1E_ARATH
ID DJ1E_ARATH Reviewed; 398 AA.
AC Q9ZV19; Q8S8L7;
DT 11-DEC-2013, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 03-AUG-2022, entry version 124.
DE RecName: Full=DJ-1 protein homolog E;
DE Short=AtDJ-1E;
DE AltName: Full=Protein YELLOW-LEAF-SPECIFIC GENE 5;
GN Name=DJ1E; Synonyms=YLS5; OrderedLocusNames=At2g38860; ORFNames=T7F6.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, DEVELOPMENTAL
RP STAGE, AND INDUCTION.
RX PubMed=11230571; DOI=10.1093/pcp/pce021;
RA Yoshida S., Ito M., Nishida I., Watanabe A.;
RT "Isolation and RNA gel blot analysis of genes that could serve as potential
RT molecular markers for leaf senescence in Arabidopsis thaliana.";
RL Plant Cell Physiol. 42:170-178(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP SUBUNIT.
RX PubMed=23651081; DOI=10.1111/febs.12321;
RA Kwon K., Choi D., Hyun J.K., Jung H.S., Baek K., Park C.;
RT "Novel glyoxalases from Arabidopsis thaliana.";
RL FEBS J. 280:3328-3339(2013).
CC -!- FUNCTION: May be involved in oxidative stress response. {ECO:0000250}.
CC -!- SUBUNIT: Homotrimer. {ECO:0000305|PubMed:23651081}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9ZV19-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9ZV19-2; Sequence=VSP_053484;
CC -!- TISSUE SPECIFICITY: Expressed in roots and cauline leaves.
CC {ECO:0000269|PubMed:11230571}.
CC -!- DEVELOPMENTAL STAGE: Up-regulated in leaves during natural senescence.
CC {ECO:0000269|PubMed:11230571}.
CC -!- INDUCTION: By ethylene, abscisic acid (ABA) and dark.
CC {ECO:0000269|PubMed:11230571}.
CC -!- SIMILARITY: Belongs to the peptidase C56 family. {ECO:0000305}.
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DR EMBL; AB047808; BAB32885.1; -; mRNA.
DR EMBL; AC005770; AAC79625.2; -; Genomic_DNA.
DR EMBL; CP002685; AEC09594.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09595.1; -; Genomic_DNA.
DR EMBL; AY048272; AAK82534.1; -; mRNA.
DR EMBL; AY090381; AAL91283.1; -; mRNA.
DR EMBL; AY084644; AAM61207.1; -; mRNA.
DR PIR; C84810; C84810.
DR RefSeq; NP_030434.1; NM_129443.2. [Q9ZV19-2]
DR RefSeq; NP_850303.1; NM_179972.3. [Q9ZV19-1]
DR AlphaFoldDB; Q9ZV19; -.
DR SMR; Q9ZV19; -.
DR BioGRID; 3810; 1.
DR IntAct; Q9ZV19; 1.
DR STRING; 3702.AT2G38860.2; -.
DR MEROPS; C56.A01; -.
DR SwissPalm; Q9ZV19; -.
DR PaxDb; Q9ZV19; -.
DR PRIDE; Q9ZV19; -.
DR ProteomicsDB; 224163; -. [Q9ZV19-1]
DR EnsemblPlants; AT2G38860.1; AT2G38860.1; AT2G38860. [Q9ZV19-2]
DR EnsemblPlants; AT2G38860.2; AT2G38860.2; AT2G38860. [Q9ZV19-1]
DR GeneID; 818470; -.
DR Gramene; AT2G38860.1; AT2G38860.1; AT2G38860. [Q9ZV19-2]
DR Gramene; AT2G38860.2; AT2G38860.2; AT2G38860. [Q9ZV19-1]
DR KEGG; ath:AT2G38860; -.
DR Araport; AT2G38860; -.
DR TAIR; locus:2064955; AT2G38860.
DR eggNOG; KOG2764; Eukaryota.
DR InParanoid; Q9ZV19; -.
DR OrthoDB; 699862at2759; -.
DR PhylomeDB; Q9ZV19; -.
DR BRENDA; 4.2.1.130; 399.
DR PRO; PR:Q9ZV19; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q9ZV19; baseline and differential.
DR Genevisible; Q9ZV19; AT.
DR GO; GO:0005794; C:Golgi apparatus; HDA:TAIR.
DR Gene3D; 3.40.50.880; -; 2.
DR InterPro; IPR006286; C56_PfpI.
DR InterPro; IPR029062; Class_I_gatase-like.
DR InterPro; IPR002818; DJ-1/PfpI.
DR PANTHER; PTHR42733; PTHR42733; 1.
DR Pfam; PF01965; DJ-1_PfpI; 2.
DR SUPFAM; SSF52317; SSF52317; 2.
PE 1: Evidence at protein level;
KW Alternative splicing; Reference proteome; Repeat; Stress response.
FT CHAIN 1..398
FT /note="DJ-1 protein homolog E"
FT /id="PRO_0000424707"
FT DOMAIN 7..199
FT /note="PfpI endopeptidase 1"
FT DOMAIN 210..393
FT /note="PfpI endopeptidase 2"
FT VAR_SEQ 61..69
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.5"
FT /id="VSP_053484"
SQ SEQUENCE 398 AA; 42730 MW; 57DF2FDE65490857 CRC64;
MASAVQKSAL LLCGDYMEAY ETIVPLYVLQ SFGVSVHCVS PNRNAGDRCV MSAHDFLGLE
LYTELVVDQL TLNANFDDVT PENYDVIIIP GGRFTELLSA DEKCVDLVAR FAESKKLIFT
SCHSQVMLMA AGILAGGVKC TAFESIKPLI ELSGGEWWQQ PGIQSMFEIT DCVKDGNFMS
TVGWPTLGHG IKLLLESLGG KVCSLEKKQA SVLFLIGDYV EDYGINVPFR ALQALGCKVD
AVTPNKKKGE VCATAVYDLE DGRQIPAEKR GHNFFVTASW DDICVDDYDC VVVPGGRSPE
LLVMNEKAVA LVKSFAEKDK VFAAIGQGKL LLAATGVLKG KRCASGKGMK VMVKVAGGEA
VMEKGCVTDG KVVTAASATD LPAFLFDLST ALGLTVMF
