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DJC13_HUMAN
ID   DJC13_HUMAN             Reviewed;        2243 AA.
AC   O75165; Q3L0T1; Q6PI82; Q6UJ77; Q6ZSW1; Q6ZUT5; Q86XG3; Q96DC1; Q9BWK9;
DT   13-APR-2004, integrated into UniProtKB/Swiss-Prot.
DT   02-NOV-2010, sequence version 5.
DT   03-AUG-2022, entry version 176.
DE   RecName: Full=DnaJ homolog subfamily C member 13;
DE   AltName: Full=Required for receptor-mediated endocytosis 8;
DE            Short=RME-8;
GN   Name=DNAJC13; Synonyms=KIAA0678, RME8;
OS   Homo sapiens (Human).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OX   NCBI_TaxID=9606;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RX   PubMed=16179350; DOI=10.1074/jbc.m505036200;
RA   Girard M., Poupon V., Blondeau F., McPherson P.S.;
RT   "The DnaJ-domain protein RME-8 functions in endosomal trafficking.";
RL   J. Biol. Chem. 280:40135-40143(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT SER-1463.
RC   TISSUE=Brain;
RX   PubMed=9734811; DOI=10.1093/dnares/5.3.169;
RA   Ishikawa K., Nagase T., Suyama M., Miyajima N., Tanaka A., Kotani H.,
RA   Nomura N., Ohara O.;
RT   "Prediction of the coding sequences of unidentified human genes. X. The
RT   complete sequences of 100 new cDNA clones from brain which can code for
RT   large proteins in vitro.";
RL   DNA Res. 5:169-176(1998).
RN   [3]
RP   SEQUENCE REVISION.
RC   TISSUE=Aortic endothelium;
RA   Ohara O., Nagase T., Kikuno R., Ishikawa K., Suyama M.;
RL   Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=16641997; DOI=10.1038/nature04728;
RA   Muzny D.M., Scherer S.E., Kaul R., Wang J., Yu J., Sudbrak R., Buhay C.J.,
RA   Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P.,
RA   Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J., Jackson A.,
RA   Khan Z.M., Kovar-Smith C., Lewis L.R., Lozado R.J., Metzker M.L.,
RA   Milosavljevic A., Miner G.R., Morgan M.B., Nazareth L.V., Scott G.,
RA   Sodergren E., Song X.-Z., Steffen D., Wei S., Wheeler D.A., Wright M.W.,
RA   Worley K.C., Yuan Y., Zhang Z., Adams C.Q., Ansari-Lari M.A., Ayele M.,
RA   Brown M.J., Chen G., Chen Z., Clendenning J., Clerc-Blankenburg K.P.,
RA   Chen R., Chen Z., Davis C., Delgado O., Dinh H.H., Dong W., Draper H.,
RA   Ernst S., Fu G., Gonzalez-Garay M.L., Garcia D.K., Gillett W., Gu J.,
RA   Hao B., Haugen E., Havlak P., He X., Hennig S., Hu S., Huang W.,
RA   Jackson L.R., Jacob L.S., Kelly S.H., Kube M., Levy R., Li Z., Liu B.,
RA   Liu J., Liu W., Lu J., Maheshwari M., Nguyen B.-V., Okwuonu G.O.,
RA   Palmeiri A., Pasternak S., Perez L.M., Phelps K.A., Plopper F.J., Qiang B.,
RA   Raymond C., Rodriguez R., Saenphimmachak C., Santibanez J., Shen H.,
RA   Shen Y., Subramanian S., Tabor P.E., Verduzco D., Waldron L., Wang J.,
RA   Wang J., Wang Q., Williams G.A., Wong G.K.-S., Yao Z., Zhang J., Zhang X.,
RA   Zhao G., Zhou J., Zhou Y., Nelson D., Lehrach H., Reinhardt R.,
RA   Naylor S.L., Yang H., Olson M., Weinstock G., Gibbs R.A.;
RT   "The DNA sequence, annotation and analysis of human chromosome 3.";
RL   Nature 440:1194-1198(2006).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-736 AND 1819-2243.
RC   TISSUE=Cervix, Placenta, and Uterus;
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 617-2243, AND VARIANT SER-1463.
RC   TISSUE=Brain;
RX   PubMed=14702039; DOI=10.1038/ng1285;
RA   Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
RA   Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
RA   Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
RA   Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
RA   Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H.,
RA   Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M.,
RA   Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K.,
RA   Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T.,
RA   Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M.,
RA   Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S.,
RA   Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H.,
RA   Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K.,
RA   Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N.,
RA   Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
RA   Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
RA   Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
RA   Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
RA   Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y.,
RA   Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K.,
RA   Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T.,
RA   Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T.,
RA   Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y.,
RA   Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H.,
RA   Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y.,
RA   Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H.,
RA   Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O.,
RA   Isogai T., Sugano S.;
RT   "Complete sequencing and characterization of 21,243 full-length human
RT   cDNAs.";
RL   Nat. Genet. 36:40-45(2004).
RN   [7]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 672-1098.
RA   Chang H.C., Hull M.J., Mellman I.;
RL   Submitted (JUL-2003) to the EMBL/GenBank/DDBJ databases.
RN   [8]
RP   FUNCTION, AND SUBCELLULAR LOCATION.
RX   PubMed=18256511; DOI=10.1247/csf.07045;
RA   Fujibayashi A., Taguchi T., Misaki R., Ohtani M., Dohmae N., Takio K.,
RA   Yamada M., Gu J., Yamakami M., Fukuda M., Waguri S., Uchiyama Y.,
RA   Yoshimori T., Sekiguchi K.;
RT   "Human RME-8 is involved in membrane trafficking through early endosomes.";
RL   Cell Struct. Funct. 33:35-50(2008).
RN   [9]
RP   FUNCTION.
RX   PubMed=18307993; DOI=10.1016/j.febslet.2008.02.042;
RA   Girard M., McPherson P.S.;
RT   "RME-8 regulates trafficking of the epidermal growth factor receptor.";
RL   FEBS Lett. 582:961-966(2008).
RN   [10]
RP   ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-84, AND IDENTIFICATION BY MASS
RP   SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=19608861; DOI=10.1126/science.1175371;
RA   Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C.,
RA   Olsen J.V., Mann M.;
RT   "Lysine acetylation targets protein complexes and co-regulates major
RT   cellular functions.";
RL   Science 325:834-840(2009).
RN   [11]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=21269460; DOI=10.1186/1752-0509-5-17;
RA   Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T.,
RA   Bennett K.L., Superti-Furga G., Colinge J.;
RT   "Initial characterization of the human central proteome.";
RL   BMC Syst. Biol. 5:17-17(2011).
RN   [12]
RP   POSSIBLE INVOLVEMENT IN PARK, VARIANT PARK SER-855, VARIANTS GLN-264;
RP   ILE-1082 AND LEU-2115, AND CHARACTERIZATION OF VARIANT PARK SER-855.
RX   PubMed=24218364; DOI=10.1093/hmg/ddt570;
RA   Vilarino-Guell C., Rajput A., Milnerwood A.J., Shah B., Szu-Tu C.,
RA   Trinh J., Yu I., Encarnacion M., Munsie L.N., Tapia L., Gustavsson E.K.,
RA   Chou P., Tatarnikov I., Evans D.M., Pishotta F.T., Volta M.,
RA   Beccano-Kelly D., Thompson C., Lin M.K., Sherman H.E., Han H.J.,
RA   Guenther B.L., Wasserman W.W., Bernard V., Ross C.J., Appel-Cresswell S.,
RA   Stoessl A.J., Robinson C.A., Dickson D.W., Ross O.A., Wszolek Z.K.,
RA   Aasly J.O., Wu R.M., Hentati F., Gibson R.A., McPherson P.S., Girard M.,
RA   Rajput M., Rajput A.H., Farrer M.J.;
RT   "DNAJC13 mutations in Parkinson disease.";
RL   Hum. Mol. Genet. 23:1794-1801(2014).
RN   [13]
RP   FUNCTION, INTERACTION WITH WASHC2C, AND SUBCELLULAR LOCATION.
RX   PubMed=24643499; DOI=10.1242/jcs.144659;
RA   Freeman C.L., Hesketh G., Seaman M.N.;
RT   "RME-8 coordinates the activity of the WASH complex with the function of
RT   the retromer SNX dimer to control endosomal tubulation.";
RL   J. Cell Sci. 127:2053-2070(2014).
RN   [14]
RP   POSSIBLE INVOLVEMENT IN PARK, VARIANTS SER-556; ALA-674; LYS-903; PHE-997;
RP   SER-1135; GLY-1291; HIS-1516; GLN-1740; SER-2057 AND TRP-2170, AND VARIANTS
RP   PARK LEU-722; SER-855; GLN-1266 AND MET-1895.
RX   PubMed=25393719; DOI=10.1002/mds.26064;
RA   Gustavsson E.K., Trinh J., Guella I., Vilarino-Gueell C.,
RA   Appel-Cresswell S., Stoessl A.J., Tsui J.K., McKeown M., Rajput A.,
RA   Rajput A.H., Aasly J.O., Farrer M.J.;
RT   "DNAJC13 genetic variants in parkinsonism.";
RL   Mov. Disord. 30:273-278(2015).
RN   [15]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=25944712; DOI=10.1002/pmic.201400617;
RA   Vaca Jacome A.S., Rabilloud T., Schaeffer-Reiss C., Rompais M., Ayoub D.,
RA   Lane L., Bairoch A., Van Dorsselaer A., Carapito C.;
RT   "N-terminome analysis of the human mitochondrial proteome.";
RL   Proteomics 15:2519-2524(2015).
RN   [16]
RP   DISCUSSION ON POSSIBLE INVOLVEMENT IN PARK.
RX   PubMed=27270108; DOI=10.1038/ng.3589;
RA   Deng H.X., Shi Y., Yang Y., Ahmeti K.B., Miller N., Huang C., Cheng L.,
RA   Zhai H., Deng S., Nuytemans K., Corbett N.J., Kim M.J., Deng H., Tang B.,
RA   Yang Z., Xu Y., Chan P., Huang B., Gao X.P., Song Z., Liu Z., Fecto F.,
RA   Siddique N., Foroud T., Jankovic J., Ghetti B., Nicholson D.A., Krainc D.,
RA   Melen O., Vance J.M., Pericak-Vance M.A., Ma Y.C., Rajput A.H.,
RA   Siddique T.;
RT   "Identification of TMEM230 mutations in familial Parkinson's disease.";
RL   Nat. Genet. 48:733-739(2016).
CC   -!- FUNCTION: Involved in membrane trafficking through early endosomes,
CC       such as the early endosome to recycling endosome transport implicated
CC       in the recycling of transferrin and the early endosome to late endosome
CC       transport implicated in degradation of EGF and EGFR (PubMed:18256511,
CC       PubMed:18307993). Involved in the regulation of endosomal membrane
CC       tubulation and regulates th dynamics of SNX1 on the endosomal membrane;
CC       via association with WASHC2 may link the WASH complex to the retromer
CC       SNX-BAR subcomplex (PubMed:24643499). {ECO:0000269|PubMed:18256511,
CC       ECO:0000269|PubMed:18307993, ECO:0000269|PubMed:24643499}.
CC   -!- SUBUNIT: Interacts with WASHC2C; mediates the association with the WASH
CC       complex (PubMed:24643499). {ECO:0000269|PubMed:24643499}.
CC   -!- SUBCELLULAR LOCATION: Early endosome {ECO:0000269|PubMed:18256511}.
CC       Early endosome membrane {ECO:0000305}; Peripheral membrane protein
CC       {ECO:0000269|PubMed:18256511}. Endosome membrane
CC       {ECO:0000269|PubMed:24643499}.
CC   -!- DISEASE: Parkinson disease (PARK) [MIM:168600]: A complex
CC       neurodegenerative disorder characterized by bradykinesia, resting
CC       tremor, muscular rigidity and postural instability. Additional features
CC       are characteristic postural abnormalities, dysautonomia, dystonic
CC       cramps, and dementia. The pathology of Parkinson disease involves the
CC       loss of dopaminergic neurons in the substantia nigra and the presence
CC       of Lewy bodies (intraneuronal accumulations of aggregated proteins), in
CC       surviving neurons in various areas of the brain. The disease is
CC       progressive and usually manifests after the age of 50 years, although
CC       early-onset cases (before 50 years) are known. The majority of the
CC       cases are sporadic suggesting a multifactorial etiology based on
CC       environmental and genetic factors. However, some patients present with
CC       a positive family history for the disease. Familial forms of the
CC       disease usually begin at earlier ages and are associated with atypical
CC       clinical features. {ECO:0000269|PubMed:24218364,
CC       ECO:0000269|PubMed:25393719}. Note=The gene represented in this entry
CC       may be involved in disease pathogenesis. Genetic variants in DNAJC13
CC       (PubMed:24218364, PubMed:25393719) and TMEM230 (PubMed:27270108) have
CC       been found in the same large multigenerational family with adult-onset
CC       Parkinson disease. The pathological role of each gene and therefore the
CC       exact molecular basis of the disease is unclear.
CC       {ECO:0000305|PubMed:27270108}.
CC   -!- CAUTION: In human, WASHC2 has undergone evolutionary duplication giving
CC       rise to highly homologous family members. A WASHC2C construct with
CC       WASHC2A-specific sequence insertions (of 2 aa and 21 aa length
CC       resulting in a construct length of 1341 aa similar to WASHC2A length)
CC       has been used to demonstrate the interaction with WASHC2
CC       (PubMed:24643499). {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAH43583.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};
CC       Sequence=BAA31653.2; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
CC       Sequence=BAC86133.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC       Sequence=BAC86835.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC       Sequence=BAC86835.1; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305};
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DR   EMBL; AY779857; AAV41096.1; -; mRNA.
DR   EMBL; AB014578; BAA31653.2; ALT_INIT; mRNA.
DR   EMBL; AC020632; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AC020633; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AC026374; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; BC000164; AAH00164.2; -; mRNA.
DR   EMBL; BC009630; AAH09630.1; -; mRNA.
DR   EMBL; BC040638; AAH40638.1; -; mRNA.
DR   EMBL; BC043583; AAH43583.1; ALT_SEQ; mRNA.
DR   EMBL; AK125330; BAC86133.1; ALT_INIT; mRNA.
DR   EMBL; AK127112; BAC86835.1; ALT_SEQ; mRNA.
DR   EMBL; AY369172; AAQ57271.1; -; mRNA.
DR   CCDS; CCDS33857.1; -.
DR   PIR; T00361; T00361.
DR   RefSeq; NP_056083.3; NM_015268.3.
DR   AlphaFoldDB; O75165; -.
DR   SMR; O75165; -.
DR   BioGRID; 116908; 119.
DR   IntAct; O75165; 50.
DR   MINT; O75165; -.
DR   STRING; 9606.ENSP00000260818; -.
DR   iPTMnet; O75165; -.
DR   MetOSite; O75165; -.
DR   PhosphoSitePlus; O75165; -.
DR   SwissPalm; O75165; -.
DR   BioMuta; DNAJC13; -.
DR   EPD; O75165; -.
DR   jPOST; O75165; -.
DR   MassIVE; O75165; -.
DR   MaxQB; O75165; -.
DR   PaxDb; O75165; -.
DR   PeptideAtlas; O75165; -.
DR   PRIDE; O75165; -.
DR   ProteomicsDB; 49830; -.
DR   Antibodypedia; 51566; 47 antibodies from 19 providers.
DR   Ensembl; ENST00000260818.11; ENSP00000260818.6; ENSG00000138246.17.
DR   GeneID; 23317; -.
DR   KEGG; hsa:23317; -.
DR   MANE-Select; ENST00000260818.11; ENSP00000260818.6; NM_015268.4; NP_056083.3.
DR   UCSC; uc003eor.4; human.
DR   CTD; 23317; -.
DR   DisGeNET; 23317; -.
DR   GeneCards; DNAJC13; -.
DR   HGNC; HGNC:30343; DNAJC13.
DR   HPA; ENSG00000138246; Low tissue specificity.
DR   MalaCards; DNAJC13; -.
DR   MIM; 168600; phenotype.
DR   MIM; 614334; gene.
DR   neXtProt; NX_O75165; -.
DR   OpenTargets; ENSG00000138246; -.
DR   Orphanet; 411602; Hereditary late-onset Parkinson disease.
DR   PharmGKB; PA134947358; -.
DR   VEuPathDB; HostDB:ENSG00000138246; -.
DR   eggNOG; KOG1789; Eukaryota.
DR   GeneTree; ENSGT00390000017582; -.
DR   HOGENOM; CLU_001238_1_0_1; -.
DR   InParanoid; O75165; -.
DR   OMA; EITNQWL; -.
DR   PhylomeDB; O75165; -.
DR   TreeFam; TF105172; -.
DR   PathwayCommons; O75165; -.
DR   Reactome; R-HSA-6798695; Neutrophil degranulation.
DR   SignaLink; O75165; -.
DR   BioGRID-ORCS; 23317; 78 hits in 1074 CRISPR screens.
DR   ChiTaRS; DNAJC13; human.
DR   GeneWiki; DNAJC13; -.
DR   GenomeRNAi; 23317; -.
DR   Pharos; O75165; Tbio.
DR   PRO; PR:O75165; -.
DR   Proteomes; UP000005640; Chromosome 3.
DR   RNAct; O75165; protein.
DR   Bgee; ENSG00000138246; Expressed in calcaneal tendon and 207 other tissues.
DR   ExpressionAtlas; O75165; baseline and differential.
DR   Genevisible; O75165; HS.
DR   GO; GO:0035577; C:azurophil granule membrane; TAS:Reactome.
DR   GO; GO:0005829; C:cytosol; IDA:HPA.
DR   GO; GO:0031901; C:early endosome membrane; IDA:UniProtKB.
DR   GO; GO:0010008; C:endosome membrane; IDA:UniProtKB.
DR   GO; GO:0070062; C:extracellular exosome; HDA:UniProtKB.
DR   GO; GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA.
DR   GO; GO:0005765; C:lysosomal membrane; HDA:UniProtKB.
DR   GO; GO:0016020; C:membrane; HDA:UniProtKB.
DR   GO; GO:0005886; C:plasma membrane; TAS:Reactome.
DR   GO; GO:0030667; C:secretory granule membrane; TAS:Reactome.
DR   GO; GO:0007032; P:endosome organization; IMP:UniProtKB.
DR   GO; GO:0001649; P:osteoblast differentiation; HDA:UniProtKB.
DR   GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR   GO; GO:0006898; P:receptor-mediated endocytosis; IBA:GO_Central.
DR   GO; GO:2000641; P:regulation of early endosome to late endosome transport; IMP:UniProtKB.
DR   GO; GO:1902954; P:regulation of early endosome to recycling endosome transport; IMP:UniProtKB.
DR   CDD; cd06257; DnaJ; 1.
DR   Gene3D; 1.10.287.110; -; 1.
DR   Gene3D; 1.25.10.10; -; 2.
DR   InterPro; IPR011989; ARM-like.
DR   InterPro; IPR016024; ARM-type_fold.
DR   InterPro; IPR001623; DnaJ_domain.
DR   InterPro; IPR044978; GRV2/DNAJC13.
DR   InterPro; IPR045802; GRV2/DNAJC13_N.
DR   InterPro; IPR035445; GYF-like_dom_sf.
DR   InterPro; IPR025640; GYF_2.
DR   InterPro; IPR036869; J_dom_sf.
DR   PANTHER; PTHR36983; PTHR36983; 1.
DR   Pfam; PF00226; DnaJ; 1.
DR   Pfam; PF14237; GYF_2; 1.
DR   Pfam; PF19432; RME-8_N; 1.
DR   SMART; SM00271; DnaJ; 1.
DR   SUPFAM; SSF46565; SSF46565; 1.
DR   SUPFAM; SSF48371; SSF48371; 3.
DR   SUPFAM; SSF55277; SSF55277; 1.
DR   PROSITE; PS50076; DNAJ_2; 1.
PE   1: Evidence at protein level;
KW   Acetylation; Chaperone; Disease variant; Endosome; Membrane;
KW   Neurodegeneration; Parkinson disease; Parkinsonism; Protein transport;
KW   Reference proteome; Transport.
FT   CHAIN           1..2243
FT                   /note="DnaJ homolog subfamily C member 13"
FT                   /id="PRO_0000071072"
FT   DOMAIN          1301..1366
FT                   /note="J"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00286"
FT   REGION          1..453
FT                   /note="Involved in membrane association"
FT                   /evidence="ECO:0000269|PubMed:18256511"
FT   MOD_RES         84
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0007744|PubMed:19608861"
FT   VARIANT         264
FT                   /note="E -> Q"
FT                   /evidence="ECO:0000269|PubMed:24218364"
FT                   /id="VAR_073784"
FT   VARIANT         556
FT                   /note="L -> S (in dbSNP:rs749000301)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076716"
FT   VARIANT         674
FT                   /note="D -> A (in dbSNP:rs199541720)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076717"
FT   VARIANT         722
FT                   /note="V -> L (in PARK; unknown pathological significance;
FT                   dbSNP:rs146930051)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076718"
FT   VARIANT         855
FT                   /note="N -> S (in PARK; unknown pathological significance;
FT                   affects regulation of endosomal membrane trafficking as
FT                   indicated by accumulation of transferrin in endosomal
FT                   compartments; dbSNP:rs387907571)"
FT                   /evidence="ECO:0000269|PubMed:24218364,
FT                   ECO:0000269|PubMed:25393719"
FT                   /id="VAR_073785"
FT   VARIANT         903
FT                   /note="R -> K (in dbSNP:rs141952333)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076719"
FT   VARIANT         997
FT                   /note="L -> F (in dbSNP:rs752189478)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076720"
FT   VARIANT         1082
FT                   /note="T -> I (in dbSNP:rs202127368)"
FT                   /evidence="ECO:0000269|PubMed:24218364"
FT                   /id="VAR_073786"
FT   VARIANT         1135
FT                   /note="N -> S (in dbSNP:rs751747947)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076721"
FT   VARIANT         1266
FT                   /note="R -> Q (in PARK; sporadic case; unknown pathological
FT                   significance; dbSNP:rs766013346)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076722"
FT   VARIANT         1291
FT                   /note="E -> G (in dbSNP:rs61748101)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076723"
FT   VARIANT         1463
FT                   /note="A -> S (in dbSNP:rs3762672)"
FT                   /evidence="ECO:0000269|PubMed:14702039,
FT                   ECO:0000269|PubMed:9734811"
FT                   /id="VAR_047458"
FT   VARIANT         1487
FT                   /note="F -> C (in dbSNP:rs4405917)"
FT                   /id="VAR_047459"
FT   VARIANT         1515
FT                   /note="P -> S (in dbSNP:rs55825559)"
FT                   /id="VAR_061144"
FT   VARIANT         1516
FT                   /note="R -> H (in dbSNP:rs139620588)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076724"
FT   VARIANT         1740
FT                   /note="E -> Q (in dbSNP:rs142160751)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076725"
FT   VARIANT         1895
FT                   /note="T -> M (in PARK; unknown pathological significance;
FT                   dbSNP:rs145242123)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076726"
FT   VARIANT         1995
FT                   /note="V -> I (in dbSNP:rs10935014)"
FT                   /id="VAR_047460"
FT   VARIANT         2057
FT                   /note="A -> S (in dbSNP:rs138693725)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076727"
FT   VARIANT         2115
FT                   /note="R -> L (in dbSNP:rs770715465)"
FT                   /evidence="ECO:0000269|PubMed:24218364"
FT                   /id="VAR_073787"
FT   VARIANT         2170
FT                   /note="L -> W (in dbSNP:rs140537885)"
FT                   /evidence="ECO:0000269|PubMed:25393719"
FT                   /id="VAR_076728"
FT   CONFLICT        476
FT                   /note="D -> E (in Ref. 2; BAA31653)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        562
FT                   /note="N -> D (in Ref. 5; AAH43583)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1097
FT                   /note="I -> T (in Ref. 6; BAC86133)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1148
FT                   /note="T -> I (in Ref. 6; BAC86835)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1227
FT                   /note="Q -> H (in Ref. 2; BAA31653)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1230
FT                   /note="T -> A (in Ref. 6; BAC86835)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        1269
FT                   /note="D -> N (in Ref. 6; BAC86133)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        2041
FT                   /note="L -> P (in Ref. 6; BAC86835)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        2091
FT                   /note="T -> A (in Ref. 6; BAC86835)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   2243 AA;  254415 MW;  C6D292837DE1F170 CRC64;
     MNIIRENKDL ACFYTTKHSW RGKYKRVFSV GTHAITTYNP NTLEVTNQWP YGDICSISPV
     GKGQGTEFNL TFRKGSGKKS ETLKFSTEHR TELLTEALRF RTDFSEGKIT GRRYNCYKHH
     WSDSRKPVIL EVTPGGFDQI NPATNRVLCS YDYRNIEGFV DLSDYQGGFC ILYGGFSRLH
     LFASEQREEI IKSAIDHAGN YIGISLRIRK EPLEFEQYLN LRFGKYSTDE SITSLAEFVV
     QKISPRHSEP VKRVLALTET CLVERDPATY NIATLKPLGE VFALVCDSEN PQLFTIEFIK
     GQVRKYSSTE RDSLLASLLD GVRASGNRDV CVKMTPTHKG QRWGLLSMPV DEEVESLHLR
     FLATPPNGNF ADAVFRFNAN ISYSGVLHAV TQDGLFSENK EKLINNAITA LLSQEGDVVA
     SNAELESQFQ AVRRLVASKA GFLAFTQLPK FRERLGVKVV KALKRSNNGI IHAAVDMLCA
     LMCPMHDDYD LRQEQLNKAS LLSSKKFLEN LLEKFNSHVD HGTGALVISS LLDFLTFALC
     APYSETTEGQ QFDMLLEMVA SNGRTLFKLF QHPSMAIIKG AGLVMKAIIE EGDKEIATKM
     QELALSEGAL PRHLHTAMFT ISSDQRMLTN RQLSRHLVGL WTADNATATN LLKRILPPGL
     LAYLESSDLV PEKDADRMHV RDNVKIAMDQ YGKFNKVPEW QRLAGKAAKE VEKFAKEKVD
     LVLMHWRDRM GIAQKENINQ KPVVLRKRRQ RIKIEANWDL FYYRFGQDHA RSNLIWNFKT
     REELKDTLES EMRAFNIDRE LGSANVISWN HHEFEVKYEC LAEEIKIGDY YLRLLLEEDE
     NEESGSIKRS YEFFNELYHR FLLTPKVNMK CLCLQALAIV YGRCHEEIGP FTDTRYIIGM
     LERCTDKLER DRLILFLNKL ILNKKNVKDL MDSNGIRILV DLLTLAHLHV SRATVPLQSN
     VIEAAPDMKR ESEKEWYFGN ADKERSGPYG FHEMQELWTK GMLNAKTRCW AQGMDGWRPL
     QSIPQLKWCL LASGQAVLNE TDLATLILNM LITMCGYFPS RDQDNAIIRP LPKVKRLLSD
     STCLPHIIQL LLTFDPILVE KVAILLYHIM QDNPQLPRLY LSGVFFFIMM YTGSNVLPVA
     RFLKYTHTKQ AFKSEETKGQ DIFQRSILGH ILPEAMVCYL ENYEPEKFSE IFLGEFDTPE
     AIWSSEMRRL MIEKIAAHLA DFTPRLQSNT RALYQYCPIP IINYPQLENE LFCNIYYLKQ
     LCDTLRFPDW PIKDPVKLLK DTLDAWKKEV EKKPPMMSID DAYEVLNLPQ GQGPHDESKI
     RKAYFRLAQK YHPDKNPEGR DMFEKVNKAY EFLCTKSAKI VDGPDPENII LILKTQSILF
     NRHKEDLQPY KYAGYPMLIR TITMETSDDL LFSKESPLLP AATELAFHTV NCSALNAEEL
     RRENGLEVLQ EAFSRCVAVL TRASKPSDMS VQVCGYISKC YSVAAQFEEC REKITEMPSI
     IKDLCRVLYF GKSIPRVAAL GVECVSSFAV DFWLQTHLFQ AGILWYLLGF LFNYDYTLEE
     SGIQKSEETN QQEVANSLAK LSVHALSRLG GYLAEEQATP ENPTIRKSLA GMLTPYVARK
     LAVASVTEIL KMLNSNTESP YLIWNNSTRA ELLEFLESQQ ENMIKKGDCD KTYGSEFVYS
     DHAKELIVGE IFVRVYNEVP TFQLEVPKAF AASLLDYIGS QAQYLHTFMA ITHAAKVESE
     QHGDRLPRVE MALEALRNVI KYNPGSESEC IGHFKLIFSL LRVHGAGQVQ QLALEVVNIV
     TSNQDCVNNI AESMVLSSLL ALLHSLPSSR QLVLETLYAL TSSTKIIKEA MAKGALIYLL
     DMFCNSTHPQ VRAQTAELFA KMTADKLIGP KVRITLMKFL PSVFMDAMRD NPEAAVHIFE
     GTHENPELIW NDNSRDKVST TVREMMLEHF KNQQDNPEAN WKLPEDFAVV FGEAEGELAV
     GGVFLRIFIA QPAWVLRKPR EFLIALLEKL TELLEKNNPH GETLETLTMA TVCLFSAQPQ
     LADQVPPLGH LPKVIQAMNH RNNAIPKSAI RVIHALSENE LCVRAMASLE TIGPLMNGMK
     KRADTVGLAC EAINRMFQKE QSELVAQALK ADLVPYLLKL LEGIGLENLD SPAATKAQIV
     KALKAMTRSL QYGEQVNEIL CRSSVWSAFK DQKHDLFISE SQTAGYLTGP GVAGYLTAGT
     STSVMSNLPP PVDHEAGDLG YQT
 
 
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