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ADDA_LACCB
ID   ADDA_LACCB              Reviewed;        1234 AA.
AC   B3WEJ1;
DT   07-JUL-2009, integrated into UniProtKB/Swiss-Prot.
DT   02-SEP-2008, sequence version 1.
DT   03-AUG-2022, entry version 80.
DE   RecName: Full=ATP-dependent helicase/nuclease subunit A {ECO:0000255|HAMAP-Rule:MF_01451};
DE            EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01451};
DE            EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01451};
DE   AltName: Full=ATP-dependent helicase/nuclease AddA {ECO:0000255|HAMAP-Rule:MF_01451};
GN   Name=addA {ECO:0000255|HAMAP-Rule:MF_01451}; Synonyms=rexA;
GN   OrderedLocusNames=LCABL_17110;
OS   Lacticaseibacillus casei (strain BL23) (Lactobacillus casei).
OC   Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
OC   Lacticaseibacillus.
OX   NCBI_TaxID=543734;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=BL23;
RA   Maze A., Boel G., Bourand A., Loux V., Gibrat J.F., Zuniga M., Hartke A.,
RA   Deutscher J.;
RT   "Lactobacillus casei BL23 complete genome sequence.";
RL   Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: The heterodimer acts as both an ATP-dependent DNA helicase
CC       and an ATP-dependent, dual-direction single-stranded exonuclease.
CC       Recognizes the chi site generating a DNA molecule suitable for the
CC       initiation of homologous recombination. The AddA nuclease domain is
CC       required for chi fragment generation; this subunit has the helicase and
CC       3' -> 5' nuclease activities. {ECO:0000255|HAMAP-Rule:MF_01451}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_01451};
CC   -!- COFACTOR:
CC       Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_01451};
CC   -!- SUBUNIT: Heterodimer of AddA and AddB/RexB. {ECO:0000255|HAMAP-
CC       Rule:MF_01451}.
CC   -!- SIMILARITY: Belongs to the helicase family. AddA subfamily.
CC       {ECO:0000255|HAMAP-Rule:MF_01451}.
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DR   EMBL; FM177140; CAQ66792.1; -; Genomic_DNA.
DR   RefSeq; WP_012491616.1; NC_010999.1.
DR   AlphaFoldDB; B3WEJ1; -.
DR   SMR; B3WEJ1; -.
DR   KEGG; lcb:LCABL_17110; -.
DR   HOGENOM; CLU_001114_3_1_9; -.
DR   OMA; KQSIYRW; -.
DR   OrthoDB; 137860at2; -.
DR   GO; GO:0008408; F:3'-5' exonuclease activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR   GO; GO:0003678; F:DNA helicase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0003690; F:double-stranded DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0000724; P:double-strand break repair via homologous recombination; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.40.50.300; -; 4.
DR   Gene3D; 3.90.320.10; -; 1.
DR   HAMAP; MF_01451; AddA; 1.
DR   InterPro; IPR014152; DNA_helicase_suAddA.
DR   InterPro; IPR014017; DNA_helicase_UvrD-like_C.
DR   InterPro; IPR000212; DNA_helicase_UvrD/REP.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR011604; PDDEXK-like_dom_sf.
DR   InterPro; IPR038726; PDDEXK_AddAB-type.
DR   InterPro; IPR011335; Restrct_endonuc-II-like.
DR   InterPro; IPR014016; UvrD-like_ATP-bd.
DR   PANTHER; PTHR11070; PTHR11070; 1.
DR   PANTHER; PTHR11070:SF48; PTHR11070:SF48; 1.
DR   Pfam; PF12705; PDDEXK_1; 1.
DR   Pfam; PF00580; UvrD-helicase; 1.
DR   Pfam; PF13361; UvrD_C; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF52980; SSF52980; 1.
DR   TIGRFAMs; TIGR02785; addA_Gpos; 1.
DR   PROSITE; PS51198; UVRD_HELICASE_ATP_BIND; 1.
DR   PROSITE; PS51217; UVRD_HELICASE_CTER; 1.
PE   3: Inferred from homology;
KW   ATP-binding; DNA damage; DNA repair; DNA-binding; Exonuclease; Helicase;
KW   Hydrolase; Nuclease; Nucleotide-binding.
FT   CHAIN           1..1234
FT                   /note="ATP-dependent helicase/nuclease subunit A"
FT                   /id="PRO_0000379278"
FT   DOMAIN          2..475
FT                   /note="UvrD-like helicase ATP-binding"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01451"
FT   DOMAIN          507..806
FT                   /note="UvrD-like helicase C-terminal"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01451"
FT   BINDING         23..30
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_01451"
SQ   SEQUENCE   1234 AA;  136943 MW;  437591E59EF50122 CRC64;
     MTQFTTSQQA AITHDGHDVL VSASAGSGKT TVLVERIIQK ILKQHADITR MLIVTFTRAA
     TAEMRTKIQT ALKKALTERR HELSGEDRRH LANQIAMVNA AKISTLDAFS LQIVQTYYYV
     IDLDPGFRLL TDETERYMLQ ERVWDDLREQ LYASDEAPAF EQLTANFSGD RDDSGLQDLM
     FELIRQAGAT TDPKAYLEGL ATPYAPEKWE ATFSQQIWPR VKGQLLQIAT SLTQASALAN
     QLPNPIWYQQ IQADLAPLQT LLETNAPTYD TVRSVLISHE FAAWSRISKG LDDADKDTKN
     AAKDLRDAAK KTWQNKLAPT FALAAEQIGD LLREAQPLVA TLANVALKFE DALTAEKAAR
     HVQDYSDIAH NALRILQQKD PQTGAPIADN YRASFDEVMV DEYQDISPLQ EALLAAVSTT
     TPGDRFMVGD VKQSIYGFRL ADPQLFIHKY QTFQDAPTDP AAPERIILAE NFRSTKNVLA
     FTNLIFSQIM DPEVGDLSYD NAAALRYGAL DYGDAHPAVK VLLYSKATSD EDSSDASELP
     GDADDNEPVD IATGQTQLVL AEIQRLINDP DAQLWDRQAQ EYRRIHYRDI TLLTRQTSQN
     SLIQTQFAAA GVPLFVADTK NFFKTTELMV MLALLKVIDN QKQDIPLVAV LRSPIVGLSA
     DQLALIRLAA KQVPYYDAVT AFLQAEPKTP LAQRTHDMLT HFFNQLSHFR DLARENDLVT
     LLWAIYQDTG FLDYVGGTPG GSQRQANLQA LIDRARTYEA GGFKGLFAFI HFITLMQKQD
     QDLAMPAQVD PDNDAVKLMT IHKSKGLEFP VVFLMQANKH FNMRDQTGTA ILTKQGIGIK
     WLDPETRVEY ELPQYQAAKA ARQNQTLAEE MRLLYVALTR AQQRLYVVGA TMSGNQLTSA
     DKTVEKWAAA AEGEARVLAP QVRSGATSYL DWIGPALIRH PQARGLAETT IKPALVGDET
     EFTIEIDVNP QVTPTATPEK VSDDSGTMVD LSAWFKKAYP FQAATTTTGF QSVSEIKRAF
     DDPDTIDLVN ADRFLGPKPP MRDLTAPAFL TETPSGISPA AIGTATHLLL QLVDLAKPIT
     MASLRALRDQ LTTKQVIAVD VAKHIDLTAL IRFFETDLGR LLLAKPQQVH REVPFSMLLP
     ADQVFEALAD DPGEDVLIHG IIDGYVSDEQ GVTLFDYKTD HNPNTAVLVD RYRGQLNLYA
     QALQDLQPKP VLHRYLVFLR TGTVVDLVAS GAGK
 
 
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