ADDA_LIMRD
ID ADDA_LIMRD Reviewed; 1392 AA.
AC A5VHK2;
DT 07-JUL-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-JUL-2007, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=ATP-dependent helicase/nuclease subunit A {ECO:0000255|HAMAP-Rule:MF_01451};
DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01451};
DE EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01451};
DE AltName: Full=ATP-dependent helicase/nuclease AddA {ECO:0000255|HAMAP-Rule:MF_01451};
GN Name=addA {ECO:0000255|HAMAP-Rule:MF_01451}; OrderedLocusNames=Lreu_0050;
OS Limosilactobacillus reuteri (strain DSM 20016) (Lactobacillus reuteri).
OC Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
OC Limosilactobacillus.
OX NCBI_TaxID=557436;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 20016;
RX PubMed=21379339; DOI=10.1371/journal.pgen.1001314;
RA Frese S.A., Benson A.K., Tannock G.W., Loach D.M., Kim J., Zhang M.,
RA Oh P.L., Heng N.C., Patil P.B., Juge N., Mackenzie D.A., Pearson B.M.,
RA Lapidus A., Dalin E., Tice H., Goltsman E., Land M., Hauser L., Ivanova N.,
RA Kyrpides N.C., Walter J.;
RT "The evolution of host specialization in the vertebrate gut symbiont
RT Lactobacillus reuteri.";
RL PLoS Genet. 7:E1001314-E1001314(2011).
CC -!- FUNCTION: The heterodimer acts as both an ATP-dependent DNA helicase
CC and an ATP-dependent, dual-direction single-stranded exonuclease.
CC Recognizes the chi site generating a DNA molecule suitable for the
CC initiation of homologous recombination. The AddA nuclease domain is
CC required for chi fragment generation; this subunit has the helicase and
CC 3' -> 5' nuclease activities. {ECO:0000255|HAMAP-Rule:MF_01451}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01451};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01451};
CC -!- SUBUNIT: Heterodimer of AddA and AddB/RexB. {ECO:0000255|HAMAP-
CC Rule:MF_01451}.
CC -!- SIMILARITY: Belongs to the helicase family. AddA subfamily.
CC {ECO:0000255|HAMAP-Rule:MF_01451}.
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DR EMBL; CP000705; ABQ82326.1; -; Genomic_DNA.
DR RefSeq; WP_003669565.1; NZ_AZDD01000013.1.
DR AlphaFoldDB; A5VHK2; -.
DR SMR; A5VHK2; -.
DR STRING; 557436.Lreu_0050; -.
DR PRIDE; A5VHK2; -.
DR EnsemblBacteria; ABQ82326; ABQ82326; Lreu_0050.
DR GeneID; 66470128; -.
DR KEGG; lre:Lreu_0050; -.
DR PATRIC; fig|557436.17.peg.369; -.
DR eggNOG; COG1074; Bacteria.
DR HOGENOM; CLU_001114_3_1_9; -.
DR OMA; KQSIYRW; -.
DR Proteomes; UP000001991; Chromosome.
DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR GO; GO:0003678; F:DNA helicase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003690; F:double-stranded DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0000724; P:double-strand break repair via homologous recombination; IEA:UniProtKB-UniRule.
DR Gene3D; 1.10.10.160; -; 1.
DR Gene3D; 3.40.50.300; -; 4.
DR Gene3D; 3.90.320.10; -; 1.
DR HAMAP; MF_01451; AddA; 1.
DR InterPro; IPR013986; DExx_box_DNA_helicase_dom_sf.
DR InterPro; IPR014152; DNA_helicase_suAddA.
DR InterPro; IPR014017; DNA_helicase_UvrD-like_C.
DR InterPro; IPR000212; DNA_helicase_UvrD/REP.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR011604; PDDEXK-like_dom_sf.
DR InterPro; IPR038726; PDDEXK_AddAB-type.
DR InterPro; IPR011335; Restrct_endonuc-II-like.
DR InterPro; IPR014016; UvrD-like_ATP-bd.
DR PANTHER; PTHR11070; PTHR11070; 2.
DR PANTHER; PTHR11070:SF48; PTHR11070:SF48; 2.
DR Pfam; PF12705; PDDEXK_1; 1.
DR Pfam; PF00580; UvrD-helicase; 2.
DR Pfam; PF13361; UvrD_C; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR SUPFAM; SSF52980; SSF52980; 1.
DR TIGRFAMs; TIGR02785; addA_Gpos; 1.
DR PROSITE; PS51198; UVRD_HELICASE_ATP_BIND; 1.
DR PROSITE; PS51217; UVRD_HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW ATP-binding; DNA damage; DNA repair; DNA-binding; Exonuclease; Helicase;
KW Hydrolase; Nuclease; Nucleotide-binding; Reference proteome.
FT CHAIN 1..1392
FT /note="ATP-dependent helicase/nuclease subunit A"
FT /id="PRO_0000379286"
FT DOMAIN 4..595
FT /note="UvrD-like helicase ATP-binding"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01451"
FT DOMAIN 623..929
FT /note="UvrD-like helicase C-terminal"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01451"
FT BINDING 25..32
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01451"
SQ SEQUENCE 1392 AA; 159710 MW; FF9599F8233A0394 CRC64;
MAGFKPTPAQ SKAINDRGEN ILVSASAGSG KTAVLVNRTI ELIKEGQSID RMLLVTFTDA
AAKNMRDKIR AALQKIVQDS ANPKDLRDRM SNQINRLAAA DISTIHAFCL KLIKRYYYLI
DLDPQFRLLT DETERLLLQE DVWHEVSEEL YRNAEEKVSG KASFSELVLN FSSDRDDQGL
DDLILRLYEI ANAQPDPEKW LQKLPDNYDL GSGSLLESNF YQQQLKPLVI EKLNQFIQDY
RELVTRASDN GLDQAAEVIK SDEELMHQLL SSLGGITVSD VCQMMAQQKF GSFRGRPAAD
DPRIDVFKDI QKQRNQLKKQ WEQMVSTYLG KQEAQEPIAK EELLTELTTF SDQFTDLLSK
ATESQLDAKT VDSLQKDQQM MQELLDLLQP PTWNTIRDLF ANAKFARMGG KPKDDELAEE
VYKSLGSART GIKKQFDQLV DRFFNYREDQ FRLISTHAQE LLRELSAVTI NFRRRYQQTK
LNRHVLEFSD LEHYAYAILT PPDDQPNWQT LVKDLQNHYQ EIMIDEYQDT NRLQESILMK
LTSPERKNLF MVGDVKQSIY RFREADPTLF LGKYQNYRQG SDGEAIVLGE NFRSMTNVTS
FTNILFEQLM DREVGEIDYD EDAHLKYAAT YYEENQDNKV HPTEVLLYDA NALDPEKEDV
EHEDDKLAGE FRMIGMRIKQ MVENQELIFH PEDGQMHPIQ YGDIVLLERT KAINNSLMEE
FNKLNIPLTV HDVESYFQAT EVRVMMSLLK IIDNPQQDIP LVAVLRSPIV GLTNQELAFI
RLQNRSVDYY AALQTFMSNY QRKALRHQSL LTSEQVNALY EKADHFLGLL RVFRQTAQQQ
TLVDLIWQIY DQTGYLDYVG AMPGGHQRQA NLHALYQRAH SYEQSSFKGL YQFIRFIEKM
QEHDKDLGVA PTQLTANTVN VMTIHGSKGL QFPVVFLIDA THGFNKGAAR ENAVVDAVAG
VGIRYMDDQR VIYDTPQRQA VIEEIQRGER AEDLRVLYVA LTRAEQRLVI TGSFNEEMRT
QSLAGSWQRW QKAYQSKNLL IGPQPRITAN SFMDWVGLAL ARYPEFNAQQ LSRGNVTLEE
STLADTKVTG LAADPHFTAK TYTALDVSDG LAKIGQNASA NVTEKNNTVA TDASEQKIEQ
ILRYRYPHLV ATKTTAYQSV TDVKRVFEDP DTRDMARWDY DQQQKVKTQG IYLNNNFDVP
AFIQQTTHEP VATEIGTATH LVFQKLPLDE GLINVEFVDQ EIQKLVGEKL INPVVAARIN
REGIVAFYQT AVGQKILKHP ADYHREVPFS MIMNGHELFK GVNVSDDERI LIHGIIDGYL
RTDEGIILVD YKNDHLNKDY RDFDLARIKD RYRGQLELYK EALNLMEGIP VVQMGLYLLE
LGEFVLFTKE GD