DNABP_ALIF1
ID DNABP_ALIF1 Reviewed; 80 AA.
AC Q5E7H1;
DT 14-OCT-2015, integrated into UniProtKB/Swiss-Prot.
DT 15-MAR-2005, sequence version 1.
DT 25-MAY-2022, entry version 77.
DE RecName: Full=DNA-binding protein VF_0530 {ECO:0000303|PubMed:21905121};
GN OrderedLocusNames=VF_0530 {ECO:0000312|EMBL:AAW85025.1};
OS Aliivibrio fischeri (strain ATCC 700601 / ES114) (Vibrio fischeri).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC Aliivibrio.
OX NCBI_TaxID=312309;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700601 / ES114 {ECO:0000312|Proteomes:UP000000537};
RX PubMed=15703294; DOI=10.1073/pnas.0409900102;
RA Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R.,
RA Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E.,
RA Stevens A., Visick K., Whistler C., Greenberg E.P.;
RT "Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with
RT pathogenic congeners.";
RL Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005).
RN [2] {ECO:0007744|PDB:2JVW}
RP STRUCTURE BY NMR, FUNCTION, AND SUBUNIT.
RX PubMed=21905121; DOI=10.1002/prot.23121;
RA Aramini J.M., Rossi P., Fischer M., Xiao R., Acton T.B., Montelione G.T.;
RT "Solution NMR structure of VF0530 from Vibrio fischeri reveals a nucleic
RT acid-binding function.";
RL Proteins 79:2988-2991(2011).
CC -!- FUNCTION: Binds double-stranded DNA (dsDNA).
CC {ECO:0000269|PubMed:21905121}.
CC -!- SUBUNIT: Monomer. {ECO:0000269|PubMed:21905121}.
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DR EMBL; CP000020; AAW85025.1; -; Genomic_DNA.
DR RefSeq; YP_203913.1; NC_006840.2.
DR PDB; 2JVW; NMR; -; A=1-80.
DR PDBsum; 2JVW; -.
DR AlphaFoldDB; Q5E7H1; -.
DR BMRB; Q5E7H1; -.
DR SMR; Q5E7H1; -.
DR STRING; 312309.VF_0530; -.
DR EnsemblBacteria; AAW85025; AAW85025; VF_0530.
DR KEGG; vfi:VF_0530; -.
DR PATRIC; fig|312309.11.peg.521; -.
DR eggNOG; COG4628; Bacteria.
DR HOGENOM; CLU_151208_2_0_6; -.
DR OMA; VNINCFK; -.
DR OrthoDB; 1457473at2; -.
DR EvolutionaryTrace; Q5E7H1; -.
DR Proteomes; UP000000537; Chromosome I.
DR GO; GO:0003690; F:double-stranded DNA binding; IDA:UniProtKB.
DR Gene3D; 1.10.720.30; -; 1.
DR InterPro; IPR018668; DNA-binding_VF530-like.
DR InterPro; IPR036361; SAP_dom_sf.
DR Pfam; PF09905; VF530; 1.
PE 1: Evidence at protein level;
KW 3D-structure; DNA-binding; Reference proteome.
FT CHAIN 1..80
FT /note="DNA-binding protein VF_0530"
FT /id="PRO_0000433962"
FT HELIX 17..27
FT /evidence="ECO:0007829|PDB:2JVW"
FT HELIX 30..36
FT /evidence="ECO:0007829|PDB:2JVW"
FT STRAND 39..41
FT /evidence="ECO:0007829|PDB:2JVW"
FT HELIX 48..57
FT /evidence="ECO:0007829|PDB:2JVW"
FT HELIX 59..73
FT /evidence="ECO:0007829|PDB:2JVW"
SQ SEQUENCE 80 AA; 9659 MW; 3DDA1033B5E19BEC CRC64;
MALIMTQQNN PLHGITLQKL LTELVEHYGW EELSYMVNIN CFKKDPSIKS SLKFLRKTDW
ARERVENIYL KLQRHKERNQ