ADDB_BACCN
ID ADDB_BACCN Reviewed; 1170 AA.
AC A7GM36;
DT 07-JUL-2009, integrated into UniProtKB/Swiss-Prot.
DT 11-SEP-2007, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000255|HAMAP-Rule:MF_01452};
DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01452};
DE EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01452};
DE AltName: Full=ATP-dependent helicase/nuclease AddB {ECO:0000255|HAMAP-Rule:MF_01452};
GN Name=addB {ECO:0000255|HAMAP-Rule:MF_01452}; OrderedLocusNames=Bcer98_0859;
OS Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus;
OC Bacillus cereus group.
OX NCBI_TaxID=315749;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 22905 / CIP 110041 / 391-98 / NVH 391-98;
RX PubMed=17434157; DOI=10.1016/j.cbi.2007.03.003;
RA Lapidus A., Goltsman E., Auger S., Galleron N., Segurens B., Dossat C.,
RA Land M.L., Broussolle V., Brillard J., Guinebretiere M.-H., Sanchis V.,
RA Nguen-the C., Lereclus D., Richardson P., Wincker P., Weissenbach J.,
RA Ehrlich S.D., Sorokin A.;
RT "Extending the Bacillus cereus group genomics to putative food-borne
RT pathogens of different toxicity.";
RL Chem. Biol. Interact. 171:236-249(2008).
CC -!- FUNCTION: The heterodimer acts as both an ATP-dependent DNA helicase
CC and an ATP-dependent, dual-direction single-stranded exonuclease.
CC Recognizes the chi site generating a DNA molecule suitable for the
CC initiation of homologous recombination. The AddB nuclease domain is not
CC required for chi fragment generation; this subunit has 5' -> 3'
CC nuclease activity. {ECO:0000255|HAMAP-Rule:MF_01452}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01452};
CC -!- COFACTOR:
CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01452};
CC Note=Binds 1 [4Fe-4S] cluster. {ECO:0000255|HAMAP-Rule:MF_01452};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01452};
CC -!- SUBUNIT: Heterodimer of AddA and AddB. {ECO:0000255|HAMAP-
CC Rule:MF_01452}.
CC -!- SIMILARITY: Belongs to the helicase family. AddB/RexB type 1 subfamily.
CC {ECO:0000255|HAMAP-Rule:MF_01452}.
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DR EMBL; CP000764; ABS21194.1; -; Genomic_DNA.
DR RefSeq; WP_011983948.1; NC_009674.1.
DR AlphaFoldDB; A7GM36; -.
DR SMR; A7GM36; -.
DR STRING; 315749.Bcer98_0859; -.
DR EnsemblBacteria; ABS21194; ABS21194; Bcer98_0859.
DR GeneID; 56416446; -.
DR KEGG; bcy:Bcer98_0859; -.
DR eggNOG; COG3857; Bacteria.
DR HOGENOM; CLU_007838_0_0_9; -.
DR OMA; DRLENYV; -.
DR OrthoDB; 1283891at2; -.
DR Proteomes; UP000002300; Chromosome.
DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
DR GO; GO:0008409; F:5'-3' exonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR GO; GO:0003678; F:DNA helicase activity; IEA:UniProtKB-EC.
DR GO; GO:0003690; F:double-stranded DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0000724; P:double-strand break repair via homologous recombination; IEA:UniProtKB-UniRule.
DR Gene3D; 3.40.50.300; -; 3.
DR Gene3D; 3.90.320.10; -; 1.
DR HAMAP; MF_01452; AddB_type1; 1.
DR InterPro; IPR014140; DNA_helicase_suAddB.
DR InterPro; IPR014017; DNA_helicase_UvrD-like_C.
DR InterPro; IPR000212; DNA_helicase_UvrD/REP.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR011604; PDDEXK-like_dom_sf.
DR InterPro; IPR038726; PDDEXK_AddAB-type.
DR PANTHER; PTHR11070; PTHR11070; 1.
DR Pfam; PF12705; PDDEXK_1; 1.
DR Pfam; PF13361; UvrD_C; 1.
DR SUPFAM; SSF52540; SSF52540; 2.
DR TIGRFAMs; TIGR02773; addB_Gpos; 1.
DR PROSITE; PS51198; UVRD_HELICASE_ATP_BIND; 1.
DR PROSITE; PS51217; UVRD_HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW 4Fe-4S; ATP-binding; DNA damage; DNA repair; Exonuclease; Hydrolase; Iron;
KW Iron-sulfur; Metal-binding; Nuclease; Nucleotide-binding.
FT CHAIN 1..1170
FT /note="ATP-dependent helicase/deoxyribonuclease subunit B"
FT /id="PRO_0000379161"
FT DOMAIN 1..343
FT /note="UvrD-like helicase ATP-binding"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01452"
FT DOMAIN 281..587
FT /note="UvrD-like helicase C-terminal"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01452"
FT BINDING 8..15
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01452"
FT BINDING 805
FT /ligand="[4Fe-4S] cluster"
FT /ligand_id="ChEBI:CHEBI:49883"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01452"
FT BINDING 1129
FT /ligand="[4Fe-4S] cluster"
FT /ligand_id="ChEBI:CHEBI:49883"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01452"
FT BINDING 1132
FT /ligand="[4Fe-4S] cluster"
FT /ligand_id="ChEBI:CHEBI:49883"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01452"
FT BINDING 1138
FT /ligand="[4Fe-4S] cluster"
FT /ligand_id="ChEBI:CHEBI:49883"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01452"
SQ SEQUENCE 1170 AA; 134521 MW; 84B8617995F36D58 CRC64;
MSLRFVIGRA GSGKSTLCLR EVQEELKERP RGKTILYLVP EQMTFQTQQA LIGSEEVRAS
IRAQVFSFSR LAWKVLQEVG GASRLHIDEA GVHMLLRKII ESRKEGLYVF QKAAEQNGFF
EHLGGMIAEF KRYNITPSHV YEMWQQLDAH SSSAEQKLLA NKIYDLQLLY DDFERALIGK
YLDSEDYLQL LIEKLPFSEY VKDAEIYIDG FHSFSPQELE IIRQLMRCGA RMTITLTVDE
KTFAQPVNEL DLFYETVLTY EKVKQVAREE KVVMEKTISL VEQPRFHSPA LAHLEAHYES
RPNEKFYGET SIAIHTAANL RAEVEGVARE IRRLVAEENY RYRDIAVLLR NGESYYDVLR
TLFADYDIPH FIDEKRSMSH HPLVECIRSA LEIISGNWRY DAVFRCVKTE LLYPLDVKKE
VMREEMDEFE NYCLAYGVQG KKWTADEPWT YRRYRSLDEG NEVITDRERQ MEEKMNRLRE
IVRTPIIRLQ KRLKRASTVM QMCEAVYLFL EELDVPKKLE QLRVRAEESG DFLFATDHDQ
VWEEVMNLLD TFVEMLGEES MSLSVFIDVM TTGLEALQFA NIPPSLDQVL IANIDRSRLS
NIRATFVIGA NEGVMPATPT DEGMLSDEER DVLAAAGVEL APTTRQTLLE EQFVLYQMVT
RASEKLYISC PLADEEGKTL LASSFMKKIK RMFPNVKETF VTNDVNDLSR AAQISYVTTP
EVTLSYVMQQ LQTWKRYGFE GDLDFWWDVY NFYVTSDEWK QKSNRVLSSL FYRNRAKKLS
TAVSRILYGD KIKGSVSRME LFNRCAYAHF AQHGLSLRER DIFKLDAPDI GELFHAALKK
IADKLLREKR TWADLSIKEC EHLSILVIEE IAPLLQRQIL LSSNRHAYLK QKLQQIIFRT
SLVLREHAKA SGFVPVDLEV PFGMGGKDSL PPMEFTLSNG VKMEVVGRID RVDKAEDESG
TFLRIIDYKS SSKALDLTEV YYGLALQMLT YLDVVISNAG TWMKQGEVAS PAGVLYFHIH
NPLVEVKGDA SEEEIEKEIL KKFKMKGLVL GDADVVRLMD NKLSTGSSDI ISAGLKKDGS
FSARSNIASE QEFSVLQKYV HHTFETIGKD ITEGVIDIAP YKMGNKAACT FCHFRSVCQF
DESLEDNQFR TLKDMKDSEA MEKIREEVGE