DNBI_ALHV1
ID DNBI_ALHV1 Reviewed; 1127 AA.
AC O36360;
DT 08-MAR-2011, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 23-FEB-2022, entry version 72.
DE RecName: Full=Major DNA-binding protein {ECO:0000255|HAMAP-Rule:MF_04007};
GN Name=DBP {ECO:0000255|HAMAP-Rule:MF_04007}; Synonyms=6;
OS Alcelaphine herpesvirus 1 (strain C500) (AlHV-1) (Malignant catarrhal fever
OS virus).
OC Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes;
OC Herpesvirales; Herpesviridae; Gammaherpesvirinae; Macavirus.
OX NCBI_TaxID=654901;
OH NCBI_TaxID=9927; Connochaetes taurinus (Blue wildebeest).
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=9261371; DOI=10.1128/jvi.71.9.6517-6525.1997;
RA Ensser A., Pflanz R., Fleckenstein B.;
RT "Primary structure of the alcelaphine herpesvirus 1 genome.";
RL J. Virol. 71:6517-6525(1997).
CC -!- FUNCTION: Plays several crucial roles in viral infection. Participates
CC in the opening of the viral DNA origin to initiate replication by
CC interacting with the origin-binding protein. May disrupt loops,
CC hairpins and other secondary structures present on ssDNA to reduce and
CC eliminate pausing of viral DNA polymerase at specific sites during
CC elongation. Promotes viral DNA recombination by performing strand-
CC transfer, characterized by the ability to transfer a DNA strand from a
CC linear duplex to a complementary single-stranded DNA circle. Can also
CC catalyze the renaturation of complementary single strands.
CC Additionally, reorganizes the host cell nucleus, leading to the
CC formation of prereplicative sites and replication compartments. This
CC process is driven by the protein which can form double-helical
CC filaments in the absence of DNA. {ECO:0000255|HAMAP-Rule:MF_04007}.
CC -!- SUBUNIT: Homooligomers. Forms double-helical filaments necessary for
CC the formation of replication compartments within the host nucleus.
CC Interacts with the origin-binding protein. Interacts with the helicase
CC primase complex; this interaction stimulates primer synthesis activity
CC of the helicase-primase complex. Interacts with the DNA polymerase.
CC Interacts with the alkaline exonuclease; this interaction increases its
CC nuclease processivity. {ECO:0000255|HAMAP-Rule:MF_04007}.
CC -!- SUBCELLULAR LOCATION: Host nucleus {ECO:0000255|HAMAP-Rule:MF_04007}.
CC Note=In the absence of DNA replication, found in the nuclear framework-
CC associated structures (prereplicative sites). As viral DNA replication
CC proceeds, it migrates to globular intranuclear structures (replication
CC compartments). {ECO:0000255|HAMAP-Rule:MF_04007}.
CC -!- SIMILARITY: Belongs to the herpesviridae major DNA-binding protein
CC family. {ECO:0000255|HAMAP-Rule:MF_04007}.
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DR EMBL; AF005370; AAC58057.1; -; Genomic_DNA.
DR PIR; T03105; T03105.
DR RefSeq; NP_065509.1; NC_002531.1.
DR SMR; O36360; -.
DR PRIDE; O36360; -.
DR GeneID; 911793; -.
DR KEGG; vg:911793; -.
DR Proteomes; UP000000941; Genome.
DR GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003697; F:single-stranded DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0039686; P:bidirectional double-stranded viral DNA replication; IEA:UniProtKB-UniRule.
DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-UniRule.
DR Gene3D; 1.20.190.40; -; 2.
DR HAMAP; MF_04007; HSV_DNBI; 1.
DR InterPro; IPR035989; DBP_sf.
DR InterPro; IPR043031; Viral_ssDBP_head.
DR InterPro; IPR000635; Viral_ssDNA-bd.
DR Pfam; PF00747; Viral_DNA_bp; 1.
DR SUPFAM; SSF118208; SSF118208; 1.
PE 3: Inferred from homology;
KW DNA replication; DNA-binding; Host nucleus; Reference proteome.
FT CHAIN 1..1127
FT /note="Major DNA-binding protein"
FT /id="PRO_0000405753"
FT REGION 1098..1127
FT /note="Required for nuclear localization"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04007"
SQ SEQUENCE 1127 AA; 126887 MW; 0A2F4CD774492D7B CRC64;
MALKHQLNHA VEDNLGSKAP IGPCGFIYIY PETHFNFKEI SLLGDKYAEA GAFSLPLLHG
VTVEEAFVPN VKAVYKKIDM TTVSVKLSTF YNRAIIFHNV EKFESIFSGP GLGSLCKEAC
DLFGYVPFTP LGEGSTDVSD ICPPVWQEKD AIMAVVITEG FKERLHLGKL IYLKSQMHSV
MINKTEVYRI PLYDEDLFTK KSSLRRLYLP AVSEYLYYTL YTSLAQSLRV HNAASLVEAI
QEQFVHDKYK MAKLVSFKEY PLATVGACDT TLMVIDAVAA ELGLSYSLSF FEAPQEKTKV
QDYYSWDIFA SCETDSDRLE ALSKWNALQA IHIHAQLFST NSIYYVNRVA RQAPIPNSKV
EPNVYNSYYL QHGLANLCEE TLFEDGSPAF TGAPASSLDG SSFTLQHLAY AAAFSPNLLA
RMCYYLQFCQ HQKSTLNPAY NITEYVGSAA NSPVCSLCSG QCPCVCINTL FYRLKDRFPP
VLQGSRRDPY VITGITNVFN ELDFLGNFAS FRDKDEDQNQ TEETPRYTYW QLNQTLTEKL
EAAGLVDSPV ADEGAGGSGS MNLEKFVRTF SDIDSLVDAE AAKFINTMIK NNVNFKESIK
GVSHVIQYNC NTYWQAPCSL MLNLYYRSIL TIIQDIALPI STVYESENPA QGYKPNEWLK
LHYQTLWTNF KSFFIDKGVI TGTEMKVVHA EQFSDFFDVD AATNNMYSPV KVQVRLARAQ
VLALKNIKVK NRILFSGTSM SEHYQNAFLK TANRRDNYIL AGPYVKFLNS FHRQLFPNLK
ISCLYLWSNF CKKKQIPCVP GVSAEALNKF FSYINNNSKQ FEEVNMLDVV PDSYVTYAKQ
RLNNAILRAC GQTQFYAVTI HSIFPKVQET CALEYPHVLG TSSVDSVEDY VNNVQNLKAL
TVNSSLRESA ANLARSRPIV TLPVVVNKYT GIAGNAQLFQ SANLGYFMGR GVDKNLLGDS
LFVKKQQNSY MRKKYLFMTP LVGNLLKPSY THQGTAFEIE TVKRTIQSIL EDQADEDVLN
RVVCELVKSL GAGCADLTLD DIQFYLGSYG MFSENILEKL DQLRELVGPW THEWAESVLK
SGTCETDEVQ FVAFEEEQVK LTSMDHSGKV VGGKKRKIAT MFDDLDL