DNBI_SUHVF
ID DNBI_SUHVF Reviewed; 1175 AA.
AC P11870; Q5PPC5;
DT 01-OCT-1989, integrated into UniProtKB/Swiss-Prot.
DT 24-NOV-2009, sequence version 2.
DT 02-DEC-2020, entry version 56.
DE RecName: Full=Major DNA-binding protein {ECO:0000255|HAMAP-Rule:MF_04007};
GN Name=DBP {ECO:0000255|HAMAP-Rule:MF_04007}; Synonyms=ICP8; ORFNames=UL29;
OS Suid herpesvirus 1 (strain Indiana-Funkhauser / Becker) (SuHV-1)
OS (Pseudorabies virus (strain Indiana-Funkhauser / Becker)).
OC Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes;
OC Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus.
OX NCBI_TaxID=31523;
OH NCBI_TaxID=9823; Sus scrofa (Pig).
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=14671123; DOI=10.1128/jvi.78.1.424-440.2004;
RA Klupp B.G., Hengartner C.J., Mettenleiter T.C., Enquist L.W.;
RT "Complete, annotated sequence of the pseudorabies virus genome.";
RL J. Virol. 78:424-440(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-66.
RX PubMed=2542904; DOI=10.1093/nar/17.9.3597;
RA Pederson N.E., Enquist L.W.;
RT "The nucleotide sequence of a pseudorabies virus gene similar to ICP18.5 of
RT herpes simplex virus type 1.";
RL Nucleic Acids Res. 17:3597-3597(1989).
CC -!- FUNCTION: Plays several crucial roles in viral infection. Participates
CC in the opening of the viral DNA origin to initiate replication by
CC interacting with the origin-binding protein. May disrupt loops,
CC hairpins and other secondary structures present on ssDNA to reduce and
CC eliminate pausing of viral DNA polymerase at specific sites during
CC elongation. Promotes viral DNA recombination by performing strand-
CC transfer, characterized by the ability to transfer a DNA strand from a
CC linear duplex to a complementary single-stranded DNA circle. Can also
CC catalyze the renaturation of complementary single strands.
CC Additionally, reorganizes the host cell nucleus, leading to the
CC formation of prereplicative sites and replication compartments. This
CC process is driven by the protein which can form double-helical
CC filaments in the absence of DNA. {ECO:0000255|HAMAP-Rule:MF_04007}.
CC -!- SUBUNIT: Homooligomers. Forms double-helical filaments necessary for
CC the formation of replication compartments within the host nucleus.
CC Interacts with the origin-binding protein. Interacts with the helicase
CC primase complex; this interaction stimulates primer synthesis activity
CC of the helicase-primase complex. Interacts with the DNA polymerase.
CC Interacts with the alkaline exonuclease; this interaction increases its
CC nuclease processivity. {ECO:0000255|HAMAP-Rule:MF_04007}.
CC -!- SUBCELLULAR LOCATION: Host nucleus {ECO:0000255|HAMAP-Rule:MF_04007}.
CC Note=In the absence of DNA replication, found in the nuclear framework-
CC associated structures (prereplicative sites). As viral DNA replication
CC proceeds, it migrates to globular intranuclear structures (replication
CC compartments). {ECO:0000255|HAMAP-Rule:MF_04007}.
CC -!- SIMILARITY: Belongs to the herpesviridae major DNA-binding protein
CC family. {ECO:0000255|HAMAP-Rule:MF_04007}.
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DR EMBL; BK001744; DAA02152.1; -; Genomic_DNA.
DR EMBL; X14573; CAA32711.1; -; Genomic_DNA.
DR PIR; S04145; S04145.
DR RefSeq; YP_068332.1; NC_006151.1.
DR SMR; P11870; -.
DR PRIDE; P11870; -.
DR GeneID; 2952495; -.
DR KEGG; vg:2952495; -.
DR GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003697; F:single-stranded DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0039686; P:bidirectional double-stranded viral DNA replication; IEA:UniProtKB-UniRule.
DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-UniRule.
DR Gene3D; 1.20.190.40; -; 2.
DR HAMAP; MF_04007; HSV_DNBI; 1.
DR InterPro; IPR035989; DBP_sf.
DR InterPro; IPR043031; Viral_ssDBP_head.
DR InterPro; IPR000635; Viral_ssDNA-bd.
DR Pfam; PF00747; Viral_DNA_bp; 1.
DR SUPFAM; SSF118208; SSF118208; 1.
PE 3: Inferred from homology;
KW DNA replication; DNA-binding; Host nucleus; Metal-binding; Zinc;
KW Zinc-finger.
FT CHAIN 1..1175
FT /note="Major DNA-binding protein"
FT /id="PRO_0000116281"
FT ZN_FING 496..509
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04007"
FT REGION 1151..1175
FT /note="Required for nuclear localization"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04007"
FT MOTIF 825..826
FT /note="Required for filament formation"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04007"
SQ SEQUENCE 1175 AA; 125351 MW; FA7C5137F15732FF CRC64;
MEAAAKTVTV RAAPLGYVYV TPIEALRRDL LALLVARSAD DAAAVAPLVR GLTVEAGFAG
HVAVVAGART TGLGGGLTLK LTPNHFHPNV FFFHNGDCVP PSSAAPALSR ACEAARARFG
FSAYRTPVDN AEETTGAEVC ARLGLAADAH AAYLVVADGF KEAVYLCNAF LHYGGAGTVS
INGHEAWRVP LYPVHLFMPD VNRLVADPFN AKNRSISEEF VYPRPFFNGP LCRLLHGYVL
GPAAVATRVR NLDAVARGAA HLAFDENHES AVLPADVTFT LFEQRRRGGD AAAGGLERRM
ASVMSADAAL SLEALVAAGV YDEEPPALDD WPVLSEAGAK DGGAAAASAG APVSQAAALG
AYVSRAAGLV GALVFSSNSV LYLTEVDDAG AADARKEGAG PSFNRFYQVA APYLAGNPQT
DKDGRVLLHT ASQPATAPGN HDFAMDHLVM ACGFCPQLLA RVLFYLERCD AGTFVGRGDV
DAVRYVAGSL DAEVPCSLCD RASRPACAHT TLHRLRHRSR ASARRRSPMG VFGTMNSAYS
DCDVLGNYAS YGALKRPNDS EPPKAIMQDT YRAAVDRLLA DVAGARIGET VTDHAGFRHA
LRALRDTVEQ AADRFVRTLV ETRDFKLRDA LYDANHTMSL SLDPYSGALC PATSFLARRT
LLAVLQDLAL SQCHGVLHGQ PVEGRNFRNQ FQPVLRRRVV DMLNGGFVTA KTVTVTLADG
IVAPDPTKGS AEPPARDHDG DLARVSFEVL RELRVKSRVM FSTGSGSLSD AARARVAGLA
GAYQRPDTAV DVLNGPLGFL LKQHHATLFP RGKPPGGQSP NPQWFWTLLQ RNQLPARLLT
KDDIETIAAV KRFSVDYGAI NYVNLTPGTV AELAQFYLAN LILRYCDHKQ FFINSLTGIT
MQSKRPRDPA AVMAWVRRPL ADAADAERAA REVLDAPRDD TWVATYTSSH LLRSVMASRP
LVVLGLGVSK YHGMAGNNRV FQAGNWSGLN GGKHVCPLMV FDRTRHFVLA CPRVGFTCSQ
TGGGAGLHDH SLGEHVKTIL ADGGPLVQTA VYAAVLHALG ARTQHLEPDD WRAIVDDEFL
AAALAEINGR VADRDGRWSV EAAAELVRDL EGQTGADGGE ETAFDFGACG AGGDVAGLAP
ASLVPAELGG KRPPPEDDLF DMGAPPEKRL TFDML