DNE22_AGRFC
ID DNE22_AGRFC Reviewed; 1085 AA.
AC Q8UKK2; Q7D3X1;
DT 19-JUL-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Error-prone DNA polymerase 2 {ECO:0000255|HAMAP-Rule:MF_01902};
DE EC=2.7.7.7 {ECO:0000255|HAMAP-Rule:MF_01902};
GN Name=dnaE2-2 {ECO:0000255|HAMAP-Rule:MF_01902}; OrderedLocusNames=Atu5100;
GN ORFNames=AGR_pAT_bx5;
OS Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens
OS (strain C58)).
OG Plasmid AT.
OC Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium;
OC Agrobacterium tumefaciens complex.
OX NCBI_TaxID=176299;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=11743193; DOI=10.1126/science.1066804;
RA Wood D.W., Setubal J.C., Kaul R., Monks D.E., Kitajima J.P., Okura V.K.,
RA Zhou Y., Chen L., Wood G.E., Almeida N.F. Jr., Woo L., Chen Y.,
RA Paulsen I.T., Eisen J.A., Karp P.D., Bovee D. Sr., Chapman P.,
RA Clendenning J., Deatherage G., Gillet W., Grant C., Kutyavin T., Levy R.,
RA Li M.-J., McClelland E., Palmieri A., Raymond C., Rouse G.,
RA Saenphimmachak C., Wu Z., Romero P., Gordon D., Zhang S., Yoo H., Tao Y.,
RA Biddle P., Jung M., Krespan W., Perry M., Gordon-Kamm B., Liao L., Kim S.,
RA Hendrick C., Zhao Z.-Y., Dolan M., Chumley F., Tingey S.V., Tomb J.-F.,
RA Gordon M.P., Olson M.V., Nester E.W.;
RT "The genome of the natural genetic engineer Agrobacterium tumefaciens
RT C58.";
RL Science 294:2317-2323(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C58 / ATCC 33970;
RX PubMed=11743194; DOI=10.1126/science.1066803;
RA Goodner B., Hinkle G., Gattung S., Miller N., Blanchard M., Qurollo B.,
RA Goldman B.S., Cao Y., Askenazi M., Halling C., Mullin L., Houmiel K.,
RA Gordon J., Vaudin M., Iartchouk O., Epp A., Liu F., Wollam C., Allinger M.,
RA Doughty D., Scott C., Lappas C., Markelz B., Flanagan C., Crowell C.,
RA Gurson J., Lomo C., Sear C., Strub G., Cielo C., Slater S.;
RT "Genome sequence of the plant pathogen and biotechnology agent
RT Agrobacterium tumefaciens C58.";
RL Science 294:2323-2328(2001).
CC -!- FUNCTION: DNA polymerase involved in damage-induced mutagenesis and
CC translesion synthesis (TLS). It is not the major replicative DNA
CC polymerase. {ECO:0000255|HAMAP-Rule:MF_01902}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) =
CC diphosphate + DNA(n+1); Xref=Rhea:RHEA:22508, Rhea:RHEA-COMP:17339,
CC Rhea:RHEA-COMP:17340, ChEBI:CHEBI:33019, ChEBI:CHEBI:61560,
CC ChEBI:CHEBI:173112; EC=2.7.7.7; Evidence={ECO:0000255|HAMAP-
CC Rule:MF_01902};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01902}.
CC -!- SIMILARITY: Belongs to the DNA polymerase type-C family. DnaE2
CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01902}.
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DR EMBL; AE007872; AAK90476.1; -; Genomic_DNA.
DR PIR; AH3171; AH3171.
DR RefSeq; NP_396035.1; NC_003064.2.
DR RefSeq; WP_010974364.1; NC_003064.2.
DR AlphaFoldDB; Q8UKK2; -.
DR SMR; Q8UKK2; -.
DR STRING; 176299.Atu5100; -.
DR PRIDE; Q8UKK2; -.
DR EnsemblBacteria; AAK90476; AAK90476; Atu5100.
DR KEGG; atu:Atu5100; -.
DR PATRIC; fig|176299.10.peg.4793; -.
DR eggNOG; COG0587; Bacteria.
DR HOGENOM; CLU_001600_4_0_5; -.
DR OMA; HTNSYYN; -.
DR PhylomeDB; Q8UKK2; -.
DR BioCyc; AGRO:ATU5100-MON; -.
DR Proteomes; UP000000813; Plasmid At.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.
DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-UniRule.
DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR HAMAP; MF_01902; DNApol_error_prone; 1.
DR InterPro; IPR011708; DNA_pol3_alpha_NTPase_dom.
DR InterPro; IPR040982; DNA_pol3_finger.
DR InterPro; IPR023073; DNA_pol_error_prone.
DR InterPro; IPR029460; DNAPol_HHH.
DR InterPro; IPR004013; PHP_dom.
DR InterPro; IPR003141; Pol/His_phosphatase_N.
DR InterPro; IPR016195; Pol/histidinol_Pase-like.
DR InterPro; IPR004805; PolC_alpha.
DR PANTHER; PTHR32294; PTHR32294; 1.
DR PANTHER; PTHR32294:SF4; PTHR32294:SF4; 1.
DR Pfam; PF07733; DNA_pol3_alpha; 1.
DR Pfam; PF17657; DNA_pol3_finger; 1.
DR Pfam; PF14579; HHH_6; 1.
DR Pfam; PF02811; PHP; 1.
DR SMART; SM00481; POLIIIAc; 1.
DR SUPFAM; SSF89550; SSF89550; 1.
DR TIGRFAMs; TIGR00594; polc; 1.
PE 3: Inferred from homology;
KW Cytoplasm; DNA damage; DNA repair; DNA replication;
KW DNA-directed DNA polymerase; Nucleotidyltransferase; Plasmid;
KW Reference proteome; Transferase.
FT CHAIN 1..1085
FT /note="Error-prone DNA polymerase 2"
FT /id="PRO_0000103363"
FT REGION 1040..1066
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1049..1064
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1085 AA; 121645 MW; 84C00A4E6B85DFB9 CRC64;
MSYAELQVTT HFSFLRGASS AQELFETAKA LGIQAIGVVD RNSLAGIVRA LEASRATDIR
LVVGCRLDLT DGMSLLVYPT DRAAYSRLTR LITLGKSRGG KNNCILHWDD VIAYSRGMIG
VLVPDLPDAT CAAQLRRIAE AFGDRAYVSL CLRRRQNDQM RLHEISNLAA RFKVKTVVTN
DVLFHEPGRR QLQDIVTCIR HNTTIDDVGF ERERHADRYL KPPEEMERLF SRYSEALART
LEIVRRCKFS LEELTYQYPE EAIVPGKDAQ ASLEHYVWEC APDRYPEGLP QDVLKTVRHE
LDLIRTMKYA PYFLTVFSIV RFARSQGILC QGRGSAANSA VCYILGITSI DPSTNDLLFE
RFVSQERDEP PDIDVDFEHE RREEVIQWIY KTYTKDKAAL CATVTRYRAK GAIRDVGKAL
GLPEDVIKAL SSGMWSWSEE VPDRNIRELN LNPDDRRLAL TLKLAQQLMG APRHLGQHPG
GFVLTHDRLD DLVPIEPATM KDRQIIEWDK DDVEALKFMK VDVLALGMLT CMAKAFDLIR
EHKGQQLDLS NIEQEDAATY AMIRKADTLG TFQIESRAQM AMLPRLKPRT FYDLVVQVAI
VRPGPIQGDM VHPYLRRREG KEPVEYPTPE LEAVLGKTLG VPLFQESAMR VAMVCAGFTG
GEADQLRKSM ATFKFTGGVS RFKDKLVSGM VKNGYSPEFA EKTFSQLEGF GSYGFPESHA
ASFALIAYAS NYIKCHYPDV FCAALLNSQP MGFYAPAQIV GDAIKHGVEV RPVCVNRSRW
DCTLERIEGS DRHAVRLGFR QVKGLAVADA ARIVAARMNN PFASVDDMWR RSSVPTEALV
QLAEADAFLP SLKLERRDAL WAIKALRDEP LPLFAAAAER EATAIAEQQE PEVALRQMTD
GHNVIEDYSH TGLTLRQHPV AFLRRDLSAR NIIPCAEAMN ARDGRWVYTA GLVLVRQKPG
SAKGVMFITI EDETGPANIV VWPSLFEKRR SVVLGSSMMA INGRIQREGE VVHLVAQQLF
DLSADLVGLA DRDTGFRLPA GRGDEFAHGG GGPDSRDRQK PVVPRDMFTP DLHIDTLKIK
SRNFQ