DNJ39_ARATH
ID DNJ39_ARATH Reviewed; 414 AA.
AC Q6XL73; Q8GWE4; Q9ZUJ4;
DT 10-MAY-2005, integrated into UniProtKB/Swiss-Prot.
DT 10-MAY-2005, sequence version 2.
DT 25-MAY-2022, entry version 113.
DE RecName: Full=Chaperone protein dnaJ 39;
DE Short=AtDjC39;
DE Short=AtJ39;
DE AltName: Full=Protein ARG1-LIKE 2;
DE Short=AtARL2;
GN Name=ATJ39; Synonyms=ARL2, C39; OrderedLocusNames=At1g59980;
GN ORFNames=T2K10.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. Wassilewskija;
RX PubMed=12970478; DOI=10.1104/pp.103.023358;
RA Guan C., Rosen E.S., Boonsirichai K., Poff K.L., Masson P.H.;
RT "The ARG1-LIKE2 gene of Arabidopsis functions in a gravity signal
RT transduction pathway that is genetically distinct from the PGM pathway.";
RL Plant Physiol. 133:100-112(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=11599562; DOI=10.1379/1466-1268(2001)006<0209:tjdpoa>2.0.co;2;
RA Miernyk J.A.;
RT "The J-domain proteins of Arabidopsis thaliana: an unexpectedly large and
RT diverse family of chaperones.";
RL Cell Stress Chaperones 6:209-218(2001).
RN [7]
RP INDUCTION.
RX PubMed=15347791; DOI=10.1104/pp.104.044594;
RA Kimbrough J.M., Salinas-Mondragon R., Boss W.F., Brown C.S., Sederoff H.W.;
RT "The fast and transient transcriptional network of gravity and mechanical
RT stimulation in the Arabidopsis root apex.";
RL Plant Physiol. 136:2790-2805(2004).
CC -!- FUNCTION: Plays a continuous role in plant development probably in the
CC structural organization of compartments (By similarity). Seems to be
CC involved in early gravitropic signal transduction within the gravity-
CC perceiving cells (statocytes). {ECO:0000250,
CC ECO:0000269|PubMed:12970478}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Peripheral membrane
CC protein {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed constitutively at low levels in
CC seedlings, roots, leaves, stems, flowers and siliques.
CC {ECO:0000269|PubMed:12970478}.
CC -!- INDUCTION: Up-regulated by mechanical and gravity stimulations.
CC {ECO:0000269|PubMed:15347791}.
CC -!- SIMILARITY: Belongs to the DnaJ family. C/III subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD14474.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY226826; AAP49705.1; -; mRNA.
DR EMBL; AC005966; AAD14474.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE33646.1; -; Genomic_DNA.
DR EMBL; AK118901; BAC43485.1; -; mRNA.
DR EMBL; BT005502; AAO63922.1; -; mRNA.
DR PIR; A96624; A96624.
DR RefSeq; NP_176206.2; NM_104690.4.
DR AlphaFoldDB; Q6XL73; -.
DR BioGRID; 27517; 1.
DR IntAct; Q6XL73; 1.
DR STRING; 3702.AT1G59980.1; -.
DR PaxDb; Q6XL73; -.
DR PRIDE; Q6XL73; -.
DR EnsemblPlants; AT1G59980.1; AT1G59980.1; AT1G59980.
DR GeneID; 842292; -.
DR Gramene; AT1G59980.1; AT1G59980.1; AT1G59980.
DR KEGG; ath:AT1G59980; -.
DR Araport; AT1G59980; -.
DR TAIR; locus:2202725; AT1G59980.
DR eggNOG; KOG0713; Eukaryota.
DR HOGENOM; CLU_031086_0_0_1; -.
DR InParanoid; Q6XL73; -.
DR OrthoDB; 924703at2759; -.
DR PhylomeDB; Q6XL73; -.
DR PRO; PR:Q6XL73; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q6XL73; baseline and differential.
DR Genevisible; Q6XL73; AT.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR CDD; cd06257; DnaJ; 1.
DR Gene3D; 1.10.287.110; -; 1.
DR InterPro; IPR001623; DnaJ_domain.
DR InterPro; IPR018253; DnaJ_domain_CS.
DR InterPro; IPR036869; J_dom_sf.
DR Pfam; PF00226; DnaJ; 1.
DR PRINTS; PR00625; JDOMAIN.
DR SMART; SM00271; DnaJ; 1.
DR SUPFAM; SSF46565; SSF46565; 1.
DR PROSITE; PS00636; DNAJ_1; 1.
DR PROSITE; PS50076; DNAJ_2; 1.
PE 2: Evidence at transcript level;
KW Chaperone; Coiled coil; Membrane; Reference proteome.
FT CHAIN 1..414
FT /note="Chaperone protein dnaJ 39"
FT /id="PRO_0000071085"
FT DOMAIN 23..88
FT /note="J"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00286"
FT REGION 1..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 362..395
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 296..324
FT /evidence="ECO:0000255"
FT COMPBIAS 8..24
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 375..395
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 63
FT /note="E -> D (in Ref. 1; AAP49705)"
FT /evidence="ECO:0000305"
FT CONFLICT 319
FT /note="A -> S (in Ref. 1; AAP49705)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 414 AA; 46785 MW; 9BC342A9CC323856 CRC64;
MATHSSRSEN KDAGEEDELR RRNPYEVLGI PSNSTDQEIK SAYRRMALRY HPDKNPDDPV
AAEMFKEVTF AYEVLSDPEN RRLYDTTGSE AVGPENEDLE LDLSSLGAVN TIFAALFNKL
GVQIKTTVSA NLLGEALNGT VTTLPLMVGQ VVSRKVEKQS AHFYSVTLTE EEAQDGLICK
VHSSAKNKFK LLYFDQVENG GLSLALQEDS RKTGKLSTAG LYFFGFPVYR FDHRVNSRAL
SRDPETGFFK RLDAFQPFEI TELKAGSHVF AVYGDNFFKS VSYTLEIFSS APFGNEKESL
RSTEAQIVSK RTELLKFEAE YHEVFAQFTE MASKCTGEVQ EIDELLKRRN EICAAYTIFP
PTKQGSSKSR SWSKKKSSLL MEPREEGEVA VREEGGVKKK KWYNIQLRQD KKKN
