DOF1_ORYSJ
ID DOF1_ORYSJ Reviewed; 378 AA.
AC Q9SXG8; A0A0P0WDP6; C7DQE1; C7J0X2; Q7XS99;
DT 30-AUG-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=Dof zinc finger protein 1 {ECO:0000305};
DE Short=OsDof1 {ECO:0000303|Ref.1};
GN Name=DOF1 {ECO:0000303|Ref.1};
GN OrderedLocusNames=Os04g0567800 {ECO:0000312|EMBL:BAS90544.1},
GN LOC_Os04g47990 {ECO:0000305};
GN ORFNames=OSJNBa0005N02.10 {ECO:0000312|EMBL:CAE02073.2};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Yukihikari; TISSUE=Aleurone;
RA Washio K.;
RT "Molecular analysis of rice cDNAs encoding Dof proteins in germinated
RT aleurone cells.";
RL (er) Plant Gene Register PGR99-107(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 267-366.
RC STRAIN=cv. Nipponbare;
RA Gaur V.S., Singh U.S., Singh V.K., Kumar A.;
RT "Oryza sativa japonica group Dof-type zinc finger protein 10 mRNA, partial
RT cds.";
RL Submitted (MAY-2009) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP DEVELOPMENTAL STAGE.
RX PubMed=11470159; DOI=10.1016/s0167-4781(01)00251-2;
RA Washio K.;
RT "Identification of Dof proteins with implication in the gibberellin-
RT regulated expression of a peptidase gene following the germination of rice
RT grains.";
RL Biochim. Biophys. Acta 1520:54-62(2001).
CC -!- FUNCTION: Transcription factor that may transactivate seed storage
CC protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00071}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9SXG8-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9SXG8-2; Sequence=VSP_059043;
CC -!- DEVELOPMENTAL STAGE: Expressed at low level in germinating seeds 3 to 5
CC days after imbibition. {ECO:0000269|PubMed:11470159}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAH92781.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAE02073.2; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AB028129; BAA78572.1; -; mRNA.
DR EMBL; AL662954; CAE02073.2; ALT_INIT; Genomic_DNA.
DR EMBL; AP008210; BAH92781.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014960; BAS90544.1; -; Genomic_DNA.
DR EMBL; GQ183537; ACT31347.1; -; mRNA.
DR RefSeq; XP_015637008.1; XM_015781522.1. [Q9SXG8-1]
DR RefSeq; XP_015637009.1; XM_015781523.1. [Q9SXG8-2]
DR AlphaFoldDB; Q9SXG8; -.
DR IntAct; Q9SXG8; 4.
DR STRING; 4530.OS04T0567800-01; -.
DR PRIDE; Q9SXG8; -.
DR EnsemblPlants; Os04t0567800-01; Os04t0567800-01; Os04g0567800. [Q9SXG8-2]
DR GeneID; 9267486; -.
DR Gramene; Os04t0567800-01; Os04t0567800-01; Os04g0567800. [Q9SXG8-2]
DR KEGG; osa:9267486; -.
DR eggNOG; ENOG502QPN9; Eukaryota.
DR HOGENOM; CLU_036438_5_1_1; -.
DR OMA; HGKEQQA; -.
DR OrthoDB; 1101510at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR045174; Dof.
DR InterPro; IPR003851; Znf_Dof.
DR PANTHER; PTHR31992; PTHR31992; 1.
DR Pfam; PF02701; zf-Dof; 1.
DR PROSITE; PS01361; ZF_DOF_1; 1.
DR PROSITE; PS50884; ZF_DOF_2; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Metal-binding; Nucleus;
KW Reference proteome; Transcription; Transcription regulation; Zinc;
KW Zinc-finger.
FT CHAIN 1..378
FT /note="Dof zinc finger protein 1"
FT /id="PRO_0000441227"
FT ZN_FING 78..132
FT /note="Dof-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT REGION 28..79
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 116..148
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 203..222
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 316..378
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 127..148
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 80
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 83
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 105
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 108
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT VAR_SEQ 1..15
FT /note="Missing (in isoform 2)"
FT /id="VSP_059043"
SQ SEQUENCE 378 AA; 37600 MW; EFBE9F9AFDA2B813 CRC64;
MDAAHWHQGL GLVKPMEEML MAANAAAGAN PNPAATAPSS VTGGALRGGG GGGAPPVAGG
AGAGSTERRA RPQKEKALNC PRCNSTNTKF CYYNNYSLQQ PRYFCKTCRR YWTEGGSLRN
VPVGGGSRKN KRSSSSAASA SPASASTANS VVTSASMSMS MASTGGGASK NPKLVHEGAQ
DLNLAFPHHG GLQAPGEFPA FPSLESSSVC NPGGPMGTNG RGGGALSAME LLRSTGCYMP
LQVPMQMPAE YATPGFALGE FRAPPPPPQS SQSLLGFSLD AHGSVGGPSA AGFGSSAGLQ
GVPESTGRLL FPFEDLKPTV SSGTGGGGAS GGGAGVDGGH QFDHGKEQQA GGGGGGPGGH
DTPGFWNGMI GGGSGTSW
