DOF2_ORYSJ
ID DOF2_ORYSJ Reviewed; 381 AA.
AC B9F1L8; C7DQD5; Q0DYQ8; Q6EPG2; Q9SXG7;
DT 30-AUG-2017, integrated into UniProtKB/Swiss-Prot.
DT 24-MAR-2009, sequence version 1.
DT 03-AUG-2022, entry version 66.
DE RecName: Full=Dof zinc finger protein 2 {ECO:0000305};
DE Short=OsDof2 {ECO:0000303|Ref.1};
GN Name=DOF2 {ECO:0000303|Ref.1};
GN OrderedLocusNames=Os02g0673700 {ECO:0000312|EMBL:BAS80255.1},
GN LOC_Os02g45200 {ECO:0000305};
GN ORFNames=OsJ_07904 {ECO:0000312|EMBL:EEE57560.1},
GN P0657H12.10 {ECO:0000312|EMBL:BAD29458.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
RC STRAIN=cv. Yukihikari; TISSUE=Aleurone;
RA Washio K.;
RT "Molecular analysis of rice cDNAs encoding Dof proteins in germinated
RT aleurone cells.";
RL (er) Plant Gene Register PGR99-107(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 187-370.
RC STRAIN=cv. Nipponbare;
RA Gaur V.S., Singh U.S., Singh V.K., Kumar A.;
RT "Oryza sativa japonica group Dof-type zinc finger protein 04 mRNA, partial
RT cds.";
RL Submitted (MAY-2009) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP DEVELOPMENTAL STAGE.
RX PubMed=11470159; DOI=10.1016/s0167-4781(01)00251-2;
RA Washio K.;
RT "Identification of Dof proteins with implication in the gibberellin-
RT regulated expression of a peptidase gene following the germination of rice
RT grains.";
RL Biochim. Biophys. Acta 1520:54-62(2001).
CC -!- FUNCTION: Transcription factor that may transactivate seed storage
CC protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00071}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=3;
CC Name=1;
CC IsoId=B9F1L8-1; Sequence=Displayed;
CC Name=2;
CC IsoId=B9F1L8-2; Sequence=VSP_059045;
CC Name=3;
CC IsoId=B9F1L8-3; Sequence=VSP_059044;
CC -!- DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after
CC imbibition. {ECO:0000269|PubMed:11470159}.
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DR EMBL; AB028130; BAA78573.1; -; mRNA.
DR EMBL; AP005885; BAD29458.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09630.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS80255.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS80256.1; -; Genomic_DNA.
DR EMBL; CM000139; EEE57560.1; -; Genomic_DNA.
DR EMBL; GQ183531; ACT31341.1; -; mRNA.
DR RefSeq; XP_015627550.1; XM_015772064.1. [B9F1L8-1]
DR RefSeq; XP_015627551.1; XM_015772065.1. [B9F1L8-3]
DR AlphaFoldDB; B9F1L8; -.
DR STRING; 4530.OS02T0673700-01; -.
DR PaxDb; B9F1L8; -.
DR PRIDE; B9F1L8; -.
DR EnsemblPlants; Os02t0673700-01; Os02t0673700-01; Os02g0673700. [B9F1L8-1]
DR EnsemblPlants; Os02t0673700-02; Os02t0673700-02; Os02g0673700. [B9F1L8-3]
DR GeneID; 4330293; -.
DR Gramene; Os02t0673700-01; Os02t0673700-01; Os02g0673700. [B9F1L8-1]
DR Gramene; Os02t0673700-02; Os02t0673700-02; Os02g0673700. [B9F1L8-3]
DR KEGG; osa:4330293; -.
DR eggNOG; ENOG502QPN9; Eukaryota.
DR HOGENOM; CLU_036438_5_1_1; -.
DR OMA; KPCNTNT; -.
DR OrthoDB; 1101510at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR045174; Dof.
DR InterPro; IPR003851; Znf_Dof.
DR PANTHER; PTHR31992; PTHR31992; 1.
DR Pfam; PF02701; zf-Dof; 1.
DR PROSITE; PS01361; ZF_DOF_1; 1.
DR PROSITE; PS50884; ZF_DOF_2; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Metal-binding; Nucleus;
KW Reference proteome; Transcription; Transcription regulation; Zinc;
KW Zinc-finger.
FT CHAIN 1..381
FT /note="Dof zinc finger protein 2"
FT /id="PRO_0000441228"
FT ZN_FING 80..134
FT /note="Dof-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT REGION 19..81
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 329..349
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 29..44
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 82
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 85
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 107
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 110
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT VAR_SEQ 1..15
FT /note="Missing (in isoform 3)"
FT /id="VSP_059044"
FT VAR_SEQ 1..8
FT /note="MDAAHWHQ -> MW (in isoform 2)"
FT /id="VSP_059045"
SQ SEQUENCE 381 AA; 38546 MW; CAFFBB4A6E402F1B CRC64;
MDAAHWHQGL GLVKPMEEML MGANPNPNGS SNQPPPPPSS AASAQRPIAP PAAGAAAGAG
AAGAGAGTER RARPQKEKAL NCPRCNSTNT KFCYYNNYSL QQPRYFCKTC RRYWTEGGSL
RNVPVGGGSR KNKRSSSSVV PSAAASASTS AAVSGSVPVG LAAKNPKLMH EGAQDLNLAF
PHHHGRALQP PEFTAFPSLE SSSVCNPGGN LAAANGAGGR GSVGAFSAME LLRSTGCYVP
LPQMAPLGMP AEYAAAGFHL GEFRMPPPPQ QQQQQQAQTV LGFSLDTHGA GAGGGSGVFG
ACSAGLQESA AGRLLFPFED LKPVVSAAAG DANSGGDHQY DHGKNQGGGG GVIGGHEAPG
FWNSSMIGNG SSNGGGGGGS W
