DOF36_ARATH
ID DOF36_ARATH Reviewed; 323 AA.
AC Q9M2U1; Q56YC1; Q9XGU4;
DT 25-OCT-2004, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 2.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Dof zinc finger protein DOF3.6;
DE Short=AtDOF3.6;
DE AltName: Full=OBF-binding protein 3;
GN Name=DOF3.6; Synonyms=OBP3; OrderedLocusNames=At3g55370;
GN ORFNames=T22E16.30;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA De Los Reyes C., Quan R., Chen H., Bautista V.R., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 20-323, TISSUE SPECIFICITY, INDUCTION, AND
RP INTERACTION WITH OBF4.
RC STRAIN=cv. Columbia;
RX PubMed=10758484; DOI=10.1046/j.1365-313x.2000.00678.x;
RA Kang H.-G., Singh K.B.;
RT "Characterization of salicylic acid-responsive, Arabidopsis Dof domain
RT proteins: overexpression of OBP3 leads to growth defects.";
RL Plant J. 21:329-339(2000).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12475498; DOI=10.1016/s1360-1385(02)02362-2;
RA Yanagisawa S.;
RT "The Dof family of plant transcription factors.";
RL Trends Plant Sci. 7:555-560(2002).
RN [7]
RP FUNCTION, AND INDUCTION BY JASMONIC ACID.
RX PubMed=12887587; DOI=10.1046/j.1365-313x.2003.01812.x;
RA Kang H.-G., Foley R.C., Onate-Sanchez L., Lin C., Singh K.B.;
RT "Target genes for OBP3, a Dof transcription factor, include novel basic
RT helix-loop-helix domain proteins inducible by salicylic acid.";
RL Plant J. 35:362-372(2003).
CC -!- FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-
CC 3' consensus core sequence. Enhances the DNA binding of OBF
CC transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
CC -!- SUBUNIT: Interacts with OBF4. {ECO:0000269|PubMed:10758484}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9M2U1-1; Sequence=Displayed;
CC -!- TISSUE SPECIFICITY: Predominantly expressed in roots.
CC {ECO:0000269|PubMed:10758484}.
CC -!- INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid
CC (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD38988.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAB75895.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL132975; CAB75895.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE79373.1; -; Genomic_DNA.
DR EMBL; AK221402; BAD94355.1; -; mRNA.
DR EMBL; BT033028; ACE73109.1; -; mRNA.
DR EMBL; AF155818; AAD38988.1; ALT_INIT; mRNA.
DR PIR; T47676; T47676.
DR PIR; T50640; T50640.
DR RefSeq; NP_191097.3; NM_115395.6. [Q9M2U1-1]
DR AlphaFoldDB; Q9M2U1; -.
DR BioGRID; 10019; 1.
DR IntAct; Q9M2U1; 1.
DR EnsemblPlants; AT3G55370.1; AT3G55370.1; AT3G55370. [Q9M2U1-1]
DR GeneID; 824703; -.
DR Gramene; AT3G55370.1; AT3G55370.1; AT3G55370. [Q9M2U1-1]
DR KEGG; ath:AT3G55370; -.
DR Araport; AT3G55370; -.
DR HOGENOM; CLU_036438_0_3_1; -.
DR InParanoid; Q9M2U1; -.
DR OMA; HHGGLMA; -.
DR PhylomeDB; Q9M2U1; -.
DR PRO; PR:Q9M2U1; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M2U1; baseline and differential.
DR Genevisible; Q9M2U1; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR045174; Dof.
DR InterPro; IPR003851; Znf_Dof.
DR PANTHER; PTHR31992; PTHR31992; 1.
DR Pfam; PF02701; zf-Dof; 1.
DR PROSITE; PS01361; ZF_DOF_1; 1.
DR PROSITE; PS50884; ZF_DOF_2; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; DNA-binding; Metal-binding; Nucleus;
KW Reference proteome; Transcription; Transcription regulation; Zinc;
KW Zinc-finger.
FT CHAIN 1..323
FT /note="Dof zinc finger protein DOF3.6"
FT /id="PRO_0000074282"
FT ZN_FING 76..130
FT /note="Dof-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT REGION 121..160
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 304..323
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 135..160
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 78
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 81
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 103
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 106
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
SQ SEQUENCE 323 AA; 35522 MW; D2CF8C4377E7AED9 CRC64;
MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM
VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR HFCKTCRRYW TRGGSLRNVP
VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL
PPLQSLGDYN SSNTGLDFGG TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL
VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
TSWGGNSSWT GFTSNNSTGH LSF
