DOF41_ARATH
ID DOF41_ARATH Reviewed; 294 AA.
AC Q9M161; C0SVG3; O23083;
DT 09-NOV-2004, integrated into UniProtKB/Swiss-Prot.
DT 09-NOV-2004, sequence version 2.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Dof zinc finger protein DOF4.1;
DE Short=AtDOF4.1;
GN Name=DOF4.1; OrderedLocusNames=At4g00940; ORFNames=A_TM018A10.2, T18A10.24;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 17-294.
RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y.,
RA Takagi M.;
RT "ORF cloning and analysis of Arabidopsis transcription factor genes.";
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12475498; DOI=10.1016/s1360-1385(02)02362-2;
RA Yanagisawa S.;
RT "The Dof family of plant transcription factors.";
RL Trends Plant Sci. 7:555-560(2002).
CC -!- FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-
CC 3' consensus core sequence. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAB62848.1; Type=Erroneous gene model prediction; Note=The predicted gene At4g00940 has been split into 2 genes: At4g00940 and At4g00950.; Evidence={ECO:0000305};
CC Sequence=CAB80903.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AF013294; AAB62848.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AL161491; CAB80903.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002687; AEE81958.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM67790.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM67791.1; -; Genomic_DNA.
DR EMBL; AB493666; BAH30504.1; -; mRNA.
DR PIR; F85012; F85012.
DR PIR; T01552; T01552.
DR RefSeq; NP_001329595.1; NM_001340283.1.
DR RefSeq; NP_001329596.1; NM_001340284.1.
DR RefSeq; NP_192003.2; NM_116321.5.
DR AlphaFoldDB; Q9M161; -.
DR BioGRID; 13243; 1.
DR STRING; 3702.AT4G00940.1; -.
DR iPTMnet; Q9M161; -.
DR PaxDb; Q9M161; -.
DR PRIDE; Q9M161; -.
DR ProteomicsDB; 222117; -.
DR EnsemblPlants; AT4G00940.1; AT4G00940.1; AT4G00940.
DR EnsemblPlants; AT4G00940.2; AT4G00940.2; AT4G00940.
DR EnsemblPlants; AT4G00940.3; AT4G00940.3; AT4G00940.
DR GeneID; 827952; -.
DR Gramene; AT4G00940.1; AT4G00940.1; AT4G00940.
DR Gramene; AT4G00940.2; AT4G00940.2; AT4G00940.
DR Gramene; AT4G00940.3; AT4G00940.3; AT4G00940.
DR KEGG; ath:AT4G00940; -.
DR Araport; AT4G00940; -.
DR TAIR; locus:2134658; AT4G00940.
DR eggNOG; ENOG502REBY; Eukaryota.
DR HOGENOM; CLU_036438_5_2_1; -.
DR InParanoid; Q9M161; -.
DR OMA; NSYNTII; -.
DR OrthoDB; 1221679at2759; -.
DR PhylomeDB; Q9M161; -.
DR PRO; PR:Q9M161; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9M161; baseline and differential.
DR Genevisible; Q9M161; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR InterPro; IPR045174; Dof.
DR InterPro; IPR003851; Znf_Dof.
DR PANTHER; PTHR31992; PTHR31992; 1.
DR Pfam; PF02701; zf-Dof; 1.
DR PROSITE; PS01361; ZF_DOF_1; 1.
DR PROSITE; PS50884; ZF_DOF_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..294
FT /note="Dof zinc finger protein DOF4.1"
FT /id="PRO_0000074284"
FT ZN_FING 68..122
FT /note="Dof-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT REGION 109..178
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 247..294
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 122..175
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 247..273
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 70
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 73
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 95
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 98
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
SQ SEQUENCE 294 AA; 33390 MW; CCD31A2EE33AF01D CRC64;
MDHHQYHHHD QYQHQMMTST NNNSYNTIVT TQPPPTTTTM DSTTATTMIM DDEKKLMTTM
STRPQEPRNC PRCNSSNTKF CYYNNYSLAQ PRYLCKSCRR YWTEGGSLRN VPVGGGSRKN
KKLPFPNSST SSSTKNLPDL NPPFVFTSSA SSSNPSKTHQ NNNDLSLSFS SPMQDKRAQG
HYGHFSEQVV TGGQNCLFQA PMGMIQFRQE YDHEHPKKNL GFSLDRNEEE IGNHDNFVVN
EEGSKMMYPY GDHEDRQQHH HVRHDDGNKK REGGSSNELW SGIILGGDSG GPTW
