DOF4_ORYSJ
ID DOF4_ORYSJ Reviewed; 282 AA.
AC Q6Z345; C7DQD6; Q9SXG5;
DT 30-AUG-2017, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Dof zinc finger protein 4 {ECO:0000305};
DE Short=OsDof4 {ECO:0000303|Ref.1};
GN Name=DOF4 {ECO:0000303|Ref.1};
GN OrderedLocusNames=Os02g0726300 {ECO:0000312|EMBL:BAF09903.1},
GN LOC_Os02g49440 {ECO:0000305};
GN ORFNames=B1121A12.10 {ECO:0000312|EMBL:BAD16079.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Yukihikari; TISSUE=Aleurone;
RA Washio K.;
RT "Molecular analysis of rice cDNAs encoding Dof proteins in germinated
RT aleurone cells.";
RL (er) Plant Gene Register PGR99-107(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 18-205.
RC STRAIN=cv. Nipponbare;
RA Gaur V.S., Singh U.S., Singh V.K., Kumar A.;
RT "Oryza sativa japonica group Dof-type zinc finger protein 05 mRNA, partial
RT cds.";
RL Submitted (MAY-2009) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP DEVELOPMENTAL STAGE, AND INDUCTION BY GIBBERELLIN.
RX PubMed=11470159; DOI=10.1016/s0167-4781(01)00251-2;
RA Washio K.;
RT "Identification of Dof proteins with implication in the gibberellin-
RT regulated expression of a peptidase gene following the germination of rice
RT grains.";
RL Biochim. Biophys. Acta 1520:54-62(2001).
CC -!- FUNCTION: Transcription factor that may transactivate seed storage
CC protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00071}.
CC -!- DEVELOPMENTAL STAGE: Expressed in germinating seeds up to 5 days after
CC imbibition. {ECO:0000269|PubMed:11470159}.
CC -!- INDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:11470159}.
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DR EMBL; AB028132; BAA78575.1; -; mRNA.
DR EMBL; AP005284; BAD16079.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09903.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS80698.1; -; Genomic_DNA.
DR EMBL; AK061000; BAG87667.1; -; mRNA.
DR EMBL; AK101321; BAG95006.1; -; mRNA.
DR EMBL; GQ183532; ACT31342.1; -; mRNA.
DR RefSeq; XP_015623188.1; XM_015767702.1.
DR AlphaFoldDB; Q6Z345; -.
DR IntAct; Q6Z345; 3.
DR STRING; 4530.OS02T0726300-01; -.
DR PaxDb; Q6Z345; -.
DR PRIDE; Q6Z345; -.
DR EnsemblPlants; Os02t0726300-01; Os02t0726300-01; Os02g0726300.
DR EnsemblPlants; Os02t0726300-03; Os02t0726300-03; Os02g0726300.
DR GeneID; 4330589; -.
DR Gramene; Os02t0726300-01; Os02t0726300-01; Os02g0726300.
DR Gramene; Os02t0726300-03; Os02t0726300-03; Os02g0726300.
DR KEGG; osa:4330589; -.
DR eggNOG; ENOG502QRBR; Eukaryota.
DR HOGENOM; CLU_075415_1_0_1; -.
DR InParanoid; Q6Z345; -.
DR OMA; TISVINH; -.
DR OrthoDB; 1438918at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR045174; Dof.
DR InterPro; IPR003851; Znf_Dof.
DR PANTHER; PTHR31992; PTHR31992; 1.
DR Pfam; PF02701; zf-Dof; 1.
DR PROSITE; PS01361; ZF_DOF_1; 1.
DR PROSITE; PS50884; ZF_DOF_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..282
FT /note="Dof zinc finger protein 4"
FT /id="PRO_0000441230"
FT ZN_FING 45..99
FT /note="Dof-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT REGION 89..161
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 97..161
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 47
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 50
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 72
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 75
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
SQ SEQUENCE 282 AA; 28962 MW; 303501D8DA2E2440 CRC64;
MQEFQSIPGL AGRLFGGAAA ADIRRAQAQQ GPASRCGGIP SPEAVKCPRC ESTNTKFCYY
NNYNLSQPRH FCKSCRRYWT KGGVLRNVPV GGGCRKTKRS GSSSAASSAP STPTAATDNA
KNQRRASASS PRSSSGGSGN TSPTAAAATT PTTPATPSSN TIAVINHATT TTTTTNPFPT
DVPPPAPIFA DQAAALASLF APPPPPPLPV FSFAAQAKTE DGIASVLLAG QTTAPTAATV
ADMTPFTSLD AGIFELGDVP PAAYWNAGSC WTDVPDPNVY LP
