DOF54_ARATH
ID DOF54_ARATH Reviewed; 307 AA.
AC Q8LDR0; Q9FJH1; Q9XGU5;
DT 25-OCT-2004, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 2.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Dof zinc finger protein DOF5.4;
DE Short=AtDOF5.4;
DE AltName: Full=OBF-binding protein 4;
GN Name=DOF5.4; Synonyms=OBP4; OrderedLocusNames=At5g60850; ORFNames=MAE1.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=10758484; DOI=10.1046/j.1365-313x.2000.00678.x;
RA Kang H.-G., Singh K.B.;
RT "Characterization of salicylic acid-responsive, Arabidopsis Dof domain
RT proteins: overexpression of OBP3 leads to growth defects.";
RL Plant J. 21:329-339(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9872454; DOI=10.1093/dnares/5.5.297;
RA Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence
RT features of the regions of 1,013,767 bp covered by sixteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:297-308(1998).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12475498; DOI=10.1016/s1360-1385(02)02362-2;
RA Yanagisawa S.;
RT "The Dof family of plant transcription factors.";
RL Trends Plant Sci. 7:555-560(2002).
CC -!- FUNCTION: Transcription factor that binds specifically to a 5'-AA[AG]G-
CC 3' consensus core sequence. Enhances the DNA binding of OBF
CC transcription factors to OCS elements (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD38987.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=AAM63069.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AF155817; AAD38987.1; ALT_FRAME; mRNA.
DR EMBL; AB015472; BAB10105.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97386.1; -; Genomic_DNA.
DR EMBL; AY056413; AAL08269.1; -; mRNA.
DR EMBL; AY081709; AAL87362.1; -; mRNA.
DR EMBL; AY085856; AAM63069.1; ALT_INIT; mRNA.
DR RefSeq; NP_200893.1; NM_125478.4.
DR AlphaFoldDB; Q8LDR0; -.
DR STRING; 3702.AT5G60850.1; -.
DR PaxDb; Q8LDR0; -.
DR PRIDE; Q8LDR0; -.
DR ProteomicsDB; 222126; -.
DR EnsemblPlants; AT5G60850.1; AT5G60850.1; AT5G60850.
DR GeneID; 836206; -.
DR Gramene; AT5G60850.1; AT5G60850.1; AT5G60850.
DR KEGG; ath:AT5G60850; -.
DR Araport; AT5G60850; -.
DR TAIR; locus:2159275; AT5G60850.
DR eggNOG; ENOG502QRBR; Eukaryota.
DR HOGENOM; CLU_075415_0_0_1; -.
DR InParanoid; Q8LDR0; -.
DR OMA; DHAYWSQ; -.
DR OrthoDB; 1292522at2759; -.
DR PhylomeDB; Q8LDR0; -.
DR PRO; PR:Q8LDR0; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q8LDR0; baseline and differential.
DR Genevisible; Q8LDR0; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR045174; Dof.
DR InterPro; IPR003851; Znf_Dof.
DR PANTHER; PTHR31992; PTHR31992; 1.
DR Pfam; PF02701; zf-Dof; 1.
DR PROSITE; PS01361; ZF_DOF_1; 1.
DR PROSITE; PS50884; ZF_DOF_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..307
FT /note="Dof zinc finger protein DOF5.4"
FT /id="PRO_0000074294"
FT ZN_FING 51..105
FT /note="Dof-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT REGION 96..147
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 121..135
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 53
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 56
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 78
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 81
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT CONFLICT 33
FT /note="Missing (in Ref. 1; AAD38987)"
FT /evidence="ECO:0000305"
FT CONFLICT 99..100
FT /note="GC -> RS (in Ref. 1; AAD38987)"
FT /evidence="ECO:0000305"
FT CONFLICT 156
FT /note="A -> P (in Ref. 1; AAD38987)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 307 AA; 32741 MW; 98B843DE3EE0D298 CRC64;
MQDIHDFSMN GVGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS LKCPRCNSLN
TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC RKAKRSKTKQ VPSSSSADKP
TTTQDDHHVE EKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVI PGFDMPNMKI
YGNGIEWSTL LGQGSSAGGV FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ
QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD
QSGLYLP
