DOF5_ORYSJ
ID DOF5_ORYSJ Reviewed; 211 AA.
AC Q5JLR7; C7DQF3; Q9SXG4;
DT 30-AUG-2017, integrated into UniProtKB/Swiss-Prot.
DT 15-FEB-2005, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Dof zinc finger protein 5 {ECO:0000305};
DE Short=OsDof5 {ECO:0000303|Ref.1};
GN Name=DOF5 {ECO:0000303|Ref.1};
GN OrderedLocusNames=Os01g0758200 {ECO:0000312|EMBL:BAF06214.1},
GN LOC_Os01g55340 {ECO:0000305};
GN ORFNames=B1131G08.10 {ECO:0000312|EMBL:BAD87583.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Yukihikari; TISSUE=Aleurone;
RA Washio K.;
RT "Molecular analysis of rice cDNAs encoding Dof proteins in germinated
RT aleurone cells.";
RL (er) Plant Gene Register PGR99-107(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare;
RA Gray J., Li T., Sun X., Wang G., Grotewold E.;
RT "Rice transcription factor ORFeome collection.";
RL Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 34-147.
RC STRAIN=cv. Nipponbare;
RA Gaur V.S., Singh U.S., Singh V.K., Kumar A.;
RT "Oryza sativa japonica group Dof-type zinc finger protein 20 gene, partial
RT cds.";
RL Submitted (MAY-2009) to the EMBL/GenBank/DDBJ databases.
RN [9]
RP DEVELOPMENTAL STAGE.
RX PubMed=11470159; DOI=10.1016/s0167-4781(01)00251-2;
RA Washio K.;
RT "Identification of Dof proteins with implication in the gibberellin-
RT regulated expression of a peptidase gene following the germination of rice
RT grains.";
RL Biochim. Biophys. Acta 1520:54-62(2001).
CC -!- FUNCTION: Transcription factor that may transactivate seed storage
CC protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00071}.
CC -!- DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after
CC imbibition. {ECO:0000269|PubMed:11470159}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA78576.1; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
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DR EMBL; AB028133; BAA78576.1; ALT_SEQ; mRNA.
DR EMBL; HQ858825; ADX60237.1; -; mRNA.
DR EMBL; AP003409; BAD87583.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06214.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS74425.1; -; Genomic_DNA.
DR EMBL; AK071083; BAG92299.1; -; mRNA.
DR EMBL; GQ183549; ACT83312.1; -; Genomic_DNA.
DR RefSeq; XP_015630447.1; XM_015774961.1.
DR AlphaFoldDB; Q5JLR7; -.
DR STRING; 4530.OS01T0758200-01; -.
DR PaxDb; Q5JLR7; -.
DR PRIDE; Q5JLR7; -.
DR EnsemblPlants; Os01t0758200-01; Os01t0758200-01; Os01g0758200.
DR GeneID; 4325308; -.
DR Gramene; Os01t0758200-01; Os01t0758200-01; Os01g0758200.
DR KEGG; osa:4325308; -.
DR eggNOG; ENOG502R885; Eukaryota.
DR HOGENOM; CLU_078374_0_0_1; -.
DR InParanoid; Q5JLR7; -.
DR OMA; RDQPMVK; -.
DR OrthoDB; 1588268at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR045174; Dof.
DR InterPro; IPR003851; Znf_Dof.
DR PANTHER; PTHR31089; PTHR31089; 1.
DR Pfam; PF02701; zf-Dof; 1.
DR PROSITE; PS01361; ZF_DOF_1; 1.
DR PROSITE; PS50884; ZF_DOF_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..211
FT /note="Dof zinc finger protein 5"
FT /id="PRO_0000441231"
FT ZN_FING 109..163
FT /note="Dof-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT REGION 37..101
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 191..211
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 68..82
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 111
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 114
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 136
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
FT BINDING 139
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00071"
SQ SEQUENCE 211 AA; 23095 MW; F5FC67D80E0A12C5 CRC64;
MLSHVEMAPA AGGFKLFGKV IMQCGVSEGT QDKAQGFVVA REKVEPEEEE EEEQRVPAAA
TSGQRASIKR EAADRDEEQR QGGGDAAGQP TQRRLQDSAE ARAAAAAPLP CPRCRSRDTK
FCYFNNYNVN QPRHFCKACH RYWTAGGALR NVPVGAGRRK NRPLGPLAVA HHNHHHRAAA
GFVLGFPNPS SPTSPSPVYT DRWPVTPDRP F
