DPGC_AMYOR
ID DPGC_AMYOR Reviewed; 434 AA.
AC G4V4T6;
DT 17-FEB-2016, integrated into UniProtKB/Swiss-Prot.
DT 14-DEC-2011, sequence version 1.
DT 03-AUG-2022, entry version 26.
DE RecName: Full=(3,5-dihydroxyphenyl)acetyl-CoA 1,2-dioxygenase {ECO:0000303|PubMed:11752437};
DE EC=1.13.11.80 {ECO:0000269|PubMed:11752437};
GN Name=dpgC;
OS Amycolatopsis orientalis (Nocardia orientalis).
OC Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
OC Amycolatopsis.
OX NCBI_TaxID=31958;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=ATCC19795;
RA Woertz T., Dietz S., Zerbe K., Robinson J.A.;
RT "The vancomycin biosynthetic gene cluster.";
RL Submitted (SEP-2011) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP FUNCTION, CATALYTIC ACTIVITY, BIOPHYSICOCHEMICAL PROPERTIES, AND SUBSTRATE
RP SPECIFICITY.
RC STRAIN=NRRL18098;
RX PubMed=11752437; DOI=10.1073/pnas.221582098;
RA Chen H., Tseng C.C., Hubbard B.K., Walsh C.T.;
RT "Glycopeptide antibiotic biosynthesis: enzymatic assembly of the dedicated
RT amino acid monomer (S)-3,5-dihydroxyphenylglycine.";
RL Proc. Natl. Acad. Sci. U.S.A. 98:14901-14906(2001).
CC -!- FUNCTION: Involved in the biosynthesis of the nonproteinogenic amino
CC acid monomer (S)-3,5-dihydroxyphenylglycine (Dpg) responsible of the
CC production of vancomycin and teicoplanin antibiotics. Catalyzes the
CC unusual conversion 3,5-dihydroxyphenylacetyl-CoA (DPA-CoA) to 3,5-
CC dihydroxyphenylglyoxylate. DpgC performed a net four-electron oxidation
CC of the benzylic carbon of DPA-CoA and the hydrolysis of the thioester
CC bond to generate free CoA. It can also use phenylacetyl-CoA (PA-CoA) as
CC substrate. {ECO:0000269|PubMed:11752437}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=(3,5-dihydroxyphenyl)acetyl-CoA + O2 = 2-(3,5-
CC dihydroxyphenyl)-2-oxoacetate + CoA + H(+); Xref=Rhea:RHEA:44632,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:15379, ChEBI:CHEBI:57287,
CC ChEBI:CHEBI:75210, ChEBI:CHEBI:84554; EC=1.13.11.80;
CC Evidence={ECO:0000269|PubMed:11752437};
CC -!- BIOPHYSICOCHEMICAL PROPERTIES:
CC Kinetic parameters:
CC KM=6 uM for DPA-CoA {ECO:0000269|PubMed:11752437};
CC KM=300 uM for PA-CoA {ECO:0000269|PubMed:11752437};
CC Note=kcat is 10 min(-1) for dioxygenase activity.
CC {ECO:0000269|PubMed:11752437};
CC -!- SUBUNIT: Homohexamer; dimer of trimers. {ECO:0000250|UniProtKB:Q8KLK7}.
CC -!- SIMILARITY: Belongs to the enoyl-CoA hydratase/isomerase family.
CC {ECO:0000305}.
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DR EMBL; HE589771; CCD33161.1; -; Genomic_DNA.
DR AlphaFoldDB; G4V4T6; -.
DR SMR; G4V4T6; -.
DR STRING; 1125971.ASJB01000062_gene4421; -.
DR eggNOG; COG1024; Bacteria.
DR BRENDA; 1.13.11.80; 315.
DR GO; GO:0016702; F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; IDA:UniProtKB.
DR GO; GO:0017000; P:antibiotic biosynthetic process; IEA:UniProtKB-KW.
DR InterPro; IPR029045; ClpP/crotonase-like_dom_sf.
DR InterPro; IPR001753; Enoyl-CoA_hydra/iso.
DR Pfam; PF00378; ECH_1; 1.
DR SUPFAM; SSF52096; SSF52096; 1.
PE 1: Evidence at protein level;
KW Antibiotic biosynthesis; Oxidoreductase.
FT CHAIN 1..434
FT /note="(3,5-dihydroxyphenyl)acetyl-CoA 1,2-dioxygenase"
FT /id="PRO_0000435522"
FT BINDING 184
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:Q8KLK7"
FT BINDING 190
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:Q8KLK7"
FT BINDING 223..226
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:Q8KLK7"
FT BINDING 234..239
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:Q8KLK7"
FT BINDING 293
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:Q8KLK7"
FT BINDING 322..324
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:Q8KLK7"
FT BINDING 413
FT /ligand="substrate"
FT /evidence="ECO:0000250|UniProtKB:Q8KLK7"
SQ SEQUENCE 434 AA; 47089 MW; 6AACB8A601BDED25 CRC64;
MTTDSPTLSL SPGLDHRALA KAAQRVDELL DGLPSPSART PAQREAASSA LDEIRAARTE
YVEAHAEEIY DRLTDGRTRY LRLDELVRAA ASAYPGLVPT EAQMAAERSR RQAEKEGREI
DQGIFLRGIL SAPKAGPHLL DAMLRPTARA LELLPEFVET GVVRMEAASL ERRDGVAYLT
LCRDDCLNAE DAQQVDDMET AVDLALLDPA VRVGMLRGGV MSHPRYAGRR VFCAGINLKK
LSSGDIPLVD FLLRRELGYI HKIVRGVATD GSWRARVIDK PWLAAVDSFA IGGGAQLLLV
FDHVVAASDA YFSLPAATEG IIPGAANYRL SRFTGPRLAR QVILGGRRIT ADEPDARLLV
DQVVPPEEMD AAIESALAAL DGDAVRANRR MVNLAEEPPD GFRRYMAEFA LQQALRIYGA
DVIGKVGGFA AGSR