DRB3_ORYSJ
ID DRB3_ORYSJ Reviewed; 437 AA.
AC Q0DJA3; A0A0P0WKE9;
DT 08-FEB-2011, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 95.
DE RecName: Full=Double-stranded RNA-binding protein 3;
DE AltName: Full=dsRNA-binding protein 3;
GN Name=DRB3; OrderedLocusNames=Os05g0307400, LOC_Os05g24160;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Binds double-stranded RNA. {ECO:0000250}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AP008211; BAF17070.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS93274.1; -; Genomic_DNA.
DR EMBL; AK072444; BAG92973.1; -; mRNA.
DR RefSeq; XP_015640437.1; XM_015784951.1.
DR AlphaFoldDB; Q0DJA3; -.
DR SMR; Q0DJA3; -.
DR STRING; 4530.OS05T0307400-01; -.
DR iPTMnet; Q0DJA3; -.
DR PaxDb; Q0DJA3; -.
DR PRIDE; Q0DJA3; -.
DR EnsemblPlants; Os05t0307400-01; Os05t0307400-01; Os05g0307400.
DR GeneID; 4338371; -.
DR Gramene; Os05t0307400-01; Os05t0307400-01; Os05g0307400.
DR KEGG; osa:4338371; -.
DR eggNOG; KOG1517; Eukaryota.
DR HOGENOM; CLU_601863_0_0_1; -.
DR InParanoid; Q0DJA3; -.
DR OMA; CISPEAG; -.
DR OrthoDB; 1344243at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q0DJA3; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003725; F:double-stranded RNA binding; IBA:GO_Central.
DR GO; GO:0004525; F:ribonuclease III activity; IBA:GO_Central.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR GO; GO:0006396; P:RNA processing; IBA:GO_Central.
DR GO; GO:0006364; P:rRNA processing; IEA:InterPro.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR029347; Raptor_N.
DR InterPro; IPR011907; RNase_III.
DR PANTHER; PTHR11207; PTHR11207; 1.
DR Pfam; PF00035; dsrm; 2.
DR Pfam; PF14538; Raptor_N; 1.
DR SMART; SM00358; DSRM; 2.
DR SMART; SM01302; Raptor_N; 1.
DR PROSITE; PS50137; DS_RBD; 2.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat; RNA-binding.
FT CHAIN 1..437
FT /note="Double-stranded RNA-binding protein 3"
FT /id="PRO_0000404680"
FT DOMAIN 35..104
FT /note="DRBM 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00266"
FT DOMAIN 120..187
FT /note="DRBM 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00266"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 288..331
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 288..328
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 437 AA; 47719 MW; F3D6AE87D520CA80 CRC64;
MKKKSAPTPL PPETANTSPA PIGATAGIRV ENCYVFKSRL QEYAQKAGLQ TPEYHTSKEG
PSHEPVFKST VVINNTSYGS LPGFSNRKAA EQSAAEVALM EIVKSIPANA NIPAVQETGL
CKNLLQEYAQ KMNYAIPSYI CTKPASGLAP FLCTVEIGGI QYIGAAARTK KDAEIKAART
ALLAIQGQSE GSANGATKYI VVPGKRVGKE VEKRPIETPK PLKAKKGGFK KKWNKRKFMK
KDGQAVDVEK DEARVAGDAH DSDVLMQPTV ITQEASCGTL FLQPCEEAKR VEDEPPRDIE
MVQPDKENQH SDAALVQPDD EARVEQEPSR DISVVQPNEE AISAKQEPSI DAATLQPKEE
AMKTGCVALV LCLNISVDPP DVIKISPCVR KECWIDPFSM AAPKALETIG KTLHSQYERW
QPKARYKLQL DPTLEEV