DRB7_ORYSJ
ID DRB7_ORYSJ Reviewed; 473 AA.
AC Q0IV63; H2KWB7;
DT 08-FEB-2011, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 89.
DE RecName: Full=Double-stranded RNA-binding protein 7;
DE AltName: Full=dsRNA-binding protein 7;
GN Name=DRB7; OrderedLocusNames=Os11g0109900, LOC_Os11g01869;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Binds double-stranded RNA. {ECO:0000250}.
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DR EMBL; DP000010; ABG22335.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF27402.1; -; Genomic_DNA.
DR EMBL; AP014967; BAT12358.1; -; Genomic_DNA.
DR EMBL; AK063961; BAG88937.1; -; mRNA.
DR EMBL; AK121852; BAH00690.1; -; mRNA.
DR RefSeq; XP_015617485.1; XM_015761999.1.
DR AlphaFoldDB; Q0IV63; -.
DR SMR; Q0IV63; -.
DR STRING; 4530.OS11T0109900-01; -.
DR PaxDb; Q0IV63; -.
DR PRIDE; Q0IV63; -.
DR EnsemblPlants; Os11t0109900-01; Os11t0109900-01; Os11g0109900.
DR GeneID; 4349575; -.
DR Gramene; Os11t0109900-01; Os11t0109900-01; Os11g0109900.
DR KEGG; osa:4349575; -.
DR eggNOG; ENOG502QV9N; Eukaryota.
DR HOGENOM; CLU_034148_0_0_1; -.
DR InParanoid; Q0IV63; -.
DR OMA; NITMARP; -.
DR OrthoDB; 1178337at2759; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR Genevisible; Q0IV63; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003725; F:double-stranded RNA binding; IBA:GO_Central.
DR GO; GO:0004525; F:ribonuclease III activity; IBA:GO_Central.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR GO; GO:0006396; P:RNA processing; IBA:GO_Central.
DR GO; GO:0006364; P:rRNA processing; IEA:InterPro.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR011907; RNase_III.
DR PANTHER; PTHR11207; PTHR11207; 1.
DR Pfam; PF00035; dsrm; 2.
DR SMART; SM00358; DSRM; 2.
DR PROSITE; PS50137; DS_RBD; 2.
PE 2: Evidence at transcript level;
KW Reference proteome; Repeat; RNA-binding.
FT CHAIN 1..473
FT /note="Double-stranded RNA-binding protein 7"
FT /id="PRO_0000404684"
FT DOMAIN 33..102
FT /note="DRBM 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00266"
FT DOMAIN 118..185
FT /note="DRBM 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00266"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 286..329
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 393..473
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 286..325
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 430..450
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 473 AA; 51203 MW; 3FCA693EEFADB310 CRC64;
MDMPPTPLPP ETANTSPAPN GATAGIRVEN CYVFKSRLQE YAQKAGLQTP EYHTFKEGPS
HEPVFKSTVV INNTSYDSLP GFFNRKAAEQ SAAEVALMEI VKSIPANANI PAVQETGLCK
NLLQEYAQKM NYAIPSYICT KSASGLAPFI CTVEIGGIQY IGAAARTKKD AEIKAARTAL
LAIQGQSEGS ANGATKYIVV PGKRVGKEVE KMPIETPKPL KIKKGGFKKK WNKRKFMKKD
GQAVVEKDEA RVAGDAHDSD VLMQPTVITQ EASCGTLFLQ PCEEAKRVEA EPPRDIEMVQ
PDKENQHSDA ALVQPDDEAR VEQEPSRDIS VVPPNEEAIS VKQEPSIDAA ILQPKEEASS
VKQEPFIDTA MLQACKEAGS VELGPARDTV ISQLNEQDRG VKQEPAGDTA VPQPDVDARV
VKEESPRTEP NGEATNMKET PKNSAVCNSP ETKEFGDITA MGSDPPATNM SEE