DRE1A_ORYSJ
ID DRE1A_ORYSJ Reviewed; 238 AA.
AC Q64MA1; A0A0N7KR49; Q6VAL0; Q71JC4; Q8LLV0;
DT 18-MAR-2008, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Dehydration-responsive element-binding protein 1A;
DE Short=Protein DREB1A;
DE AltName: Full=Protein C-repeat-binding factor 3;
DE Short=rCBF3;
GN Name=DREB1A; Synonyms=CBF3, ERF24;
GN OrderedLocusNames=Os09g0522200, LOC_Os09g35030; ORFNames=OSJNOa273B05.11;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, INDUCTION BY COLD, AND GENE FAMILY.
RX PubMed=12609047; DOI=10.1046/j.1365-313x.2003.01661.x;
RA Dubouzet J.G., Sakuma Y., Ito Y., Kasuga M., Dubouzet E.G., Miura S.,
RA Seki M., Shinozaki K., Yamaguchi-Shinozaki K.;
RT "OsDREB genes in rice, Oryza sativa L., encode transcription activators
RT that function in drought-, high-salt- and cold-responsive gene
RT expression.";
RL Plant J. 33:751-763(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Chen J., Chen S.;
RT "Isolation and characterization of a DREB1-like gene in rice.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Yao Q., Peng R., Xiong A.;
RT "Isolation of rice DREBs, transcription factors involved in
RT dehydration- and cold-inducible gene expression.";
RL Submitted (JUL-2003) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP FUNCTION.
RX PubMed=16284406; DOI=10.1093/pcp/pci230;
RA Ito Y., Katsura K., Maruyama K., Taji T., Kobayashi M., Seki M.,
RA Shinozaki K., Yamaguchi-Shinozaki K.;
RT "Functional analysis of rice DREB1/CBF-type transcription factors involved
RT in cold-responsive gene expression in transgenic rice.";
RL Plant Cell Physiol. 47:141-153(2006).
RN [9]
RP GENE FAMILY.
RC STRAIN=cv. Nipponbare;
RX PubMed=16244905; DOI=10.1007/s11103-005-2498-2;
RA Skinner J.S., von Zitzewitz J., Szuecs P., Marquez-Cedillo L.,
RA Filichkin T., Amundsen K., Stockinger E.J., Thomashow M.F., Chen T.H.H.,
RA Hayes P.M.;
RT "Structural, functional, and phylogenetic characterization of a large CBF
RT gene family in barley.";
RL Plant Mol. Biol. 59:533-551(2005).
RN [10]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16407444; DOI=10.1104/pp.105.073783;
RA Nakano T., Suzuki K., Fujimura T., Shinshi H.;
RT "Genome-wide analysis of the ERF gene family in Arabidopsis and rice.";
RL Plant Physiol. 140:411-432(2006).
CC -!- FUNCTION: Transcriptional activator that binds specifically to the DNA
CC sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates
CC high salinity- and dehydration-inducible transcription. Confers
CC resistance to high salt, cold and drought stress.
CC {ECO:0000269|PubMed:12609047, ECO:0000269|PubMed:16284406}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- INDUCTION: By high-salt and cold stress. {ECO:0000269|PubMed:12609047}.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. ERF
CC subfamily. {ECO:0000305}.
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DR EMBL; AF300970; AAN02486.1; -; mRNA.
DR EMBL; AF494422; AAQ06658.1; -; mRNA.
DR EMBL; AY345233; AAQ23983.1; -; mRNA.
DR EMBL; AP006859; BAD46704.1; -; Genomic_DNA.
DR EMBL; AP008215; BAF25626.1; -; Genomic_DNA.
DR EMBL; AP014965; BAT09026.1; -; Genomic_DNA.
DR EMBL; AK105599; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015610912.1; XM_015755426.1.
DR AlphaFoldDB; Q64MA1; -.
DR STRING; 4530.OS09T0522200-01; -.
DR PaxDb; Q64MA1; -.
DR PRIDE; Q64MA1; -.
DR EnsemblPlants; Os09t0522200-01; Os09t0522200-01; Os09g0522200.
DR GeneID; 4347620; -.
DR Gramene; Os09t0522200-01; Os09t0522200-01; Os09g0522200.
DR KEGG; osa:4347620; -.
DR eggNOG; ENOG502SNA4; Eukaryota.
DR HOGENOM; CLU_063331_1_0_1; -.
DR InParanoid; Q64MA1; -.
DR OMA; NDTGDEM; -.
DR OrthoDB; 1352198at2759; -.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR Genevisible; Q64MA1; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd00018; AP2; 1.
DR Gene3D; 3.30.730.10; -; 1.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR InterPro; IPR045277; DRE1A-I.
DR PANTHER; PTHR31839; PTHR31839; 1.
DR Pfam; PF00847; AP2; 1.
DR PRINTS; PR00367; ETHRSPELEMNT.
DR SMART; SM00380; AP2; 1.
DR SUPFAM; SSF54171; SSF54171; 1.
DR PROSITE; PS51032; AP2_ERF; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Stress response;
KW Transcription; Transcription regulation.
FT CHAIN 1..238
FT /note="Dehydration-responsive element-binding protein 1A"
FT /id="PRO_0000323039"
FT DNA_BIND 50..115
FT /note="AP2/ERF"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT REGION 1..41
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 155..188
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 8..28
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 124
FT /note="P -> R (in Ref. 3; AAQ23983)"
FT /evidence="ECO:0000305"
FT CONFLICT 172
FT /note="D -> E (in Ref. 2; AAQ06658)"
FT /evidence="ECO:0000305"
FT CONFLICT 183
FT /note="S -> P (in Ref. 7; AK105599)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 238 AA; 25390 MW; 4A5AD816CED6B824 CRC64;
MCGIKQEMSG ESSGSPCSSA SAERQHQTVW TAPPKRPAGR TKFRETRHPV FRGVRRRGNA
GRWVCEVRVP GRRGCRLWLG TFDTAEGAAR AHDAAMLAIN AGGGGGGGAC CLNFADSAWL
LAVPRSYRTL ADVRHAVAEA VEDFFRRRLA DDALSATSSS STTPSTPRTD DDEESAATDG
DESSSPASDL AFELDVLSDM GWDLYYASLA QGMLMEPPSA ALGDDGDAIL ADVPLWSY
