DRE1D_ORYSJ
ID DRE1D_ORYSJ Reviewed; 253 AA.
AC Q6J1A5; A0A0P0WTF3; Q9AXT7;
DT 18-MAR-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Dehydration-responsive element-binding protein 1D;
DE Short=Protein DREB1D;
DE AltName: Full=Protein C-repeat-binding factor 4;
GN Name=DREB1D; Synonyms=CBF4, ERF116;
GN OrderedLocusNames=Os06g0165600, LOC_Os06g06970;
GN ORFNames=OSJNBa0015I14.27, P0680A03.1;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Somegawa;
RX PubMed=12177491; DOI=10.1104/pp.003046;
RA Choi D.-W., Rodriguez E.M., Close T.J.;
RT "Barley Cbf3 gene identification, expression pattern, and map location.";
RL Plant Physiol. 129:1781-1787(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], AND INDUCTION BY COLD.
RC STRAIN=cv. CT6748-8-CA-17;
RX PubMed=15656983; DOI=10.1016/j.gene.2004.09.033;
RA Morsy M.R., Almutairi A.M., Gibbons J., Yun S.J., De Los Reyes B.G.;
RT "The OsLti6 genes encoding low-molecular-weight membrane proteins are
RT differentially expressed in rice cultivars with contrasting sensitivity to
RT low temperature.";
RL Gene 344:171-180(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND GENE FAMILY.
RC STRAIN=cv. Nipponbare;
RX PubMed=16244905; DOI=10.1007/s11103-005-2498-2;
RA Skinner J.S., von Zitzewitz J., Szuecs P., Marquez-Cedillo L.,
RA Filichkin T., Amundsen K., Stockinger E.J., Thomashow M.F., Chen T.H.H.,
RA Hayes P.M.;
RT "Structural, functional, and phylogenetic characterization of a large CBF
RT gene family in barley.";
RL Plant Mol. Biol. 59:533-551(2005).
RN [4]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Yao Q., Peng R., Xiong A.;
RT "Isolation of rice DREBs, transcription factors involved in
RT dehydration- and cold-inducible gene expression.";
RL Submitted (JUL-2003) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [8]
RP GENE FAMILY.
RX PubMed=12609047; DOI=10.1046/j.1365-313x.2003.01661.x;
RA Dubouzet J.G., Sakuma Y., Ito Y., Kasuga M., Dubouzet E.G., Miura S.,
RA Seki M., Shinozaki K., Yamaguchi-Shinozaki K.;
RT "OsDREB genes in rice, Oryza sativa L., encode transcription activators
RT that function in drought-, high-salt- and cold-responsive gene
RT expression.";
RL Plant J. 33:751-763(2003).
RN [9]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16407444; DOI=10.1104/pp.105.073783;
RA Nakano T., Suzuki K., Fujimura T., Shinshi H.;
RT "Genome-wide analysis of the ERF gene family in Arabidopsis and rice.";
RL Plant Physiol. 140:411-432(2006).
CC -!- FUNCTION: Transcriptional activator that binds specifically to the DNA
CC sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates
CC high salinity- and dehydration-inducible transcription (By similarity).
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- INDUCTION: By cold stress. {ECO:0000269|PubMed:15656983}.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. ERF
CC subfamily. {ECO:0000305}.
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DR EMBL; AF243384; AAG59619.1; -; mRNA.
DR EMBL; AY607691; AAT37943.1; -; mRNA.
DR EMBL; AY785895; AAX23721.1; -; Genomic_DNA.
DR EMBL; AY345235; AAQ23985.1; -; mRNA.
DR EMBL; AB023482; BAD67595.1; -; Genomic_DNA.
DR EMBL; AP002536; BAD67857.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18823.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS96326.1; -; Genomic_DNA.
DR AlphaFoldDB; Q6J1A5; -.
DR SMR; Q6J1A5; -.
DR STRING; 4530.OS06T0165600-01; -.
DR PaxDb; Q6J1A5; -.
DR PRIDE; Q6J1A5; -.
DR EnsemblPlants; Os06t0165600-01; Os06t0165600-01; Os06g0165600.
DR Gramene; Os06t0165600-01; Os06t0165600-01; Os06g0165600.
DR HOGENOM; CLU_1100023_0_0_1; -.
DR InParanoid; Q6J1A5; -.
DR PlantReactome; R-OSA-8879007; Response to cold temperature.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q6J1A5; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd00018; AP2; 1.
DR Gene3D; 3.30.730.10; -; 1.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR InterPro; IPR045277; DRE1A-I.
DR PANTHER; PTHR31839; PTHR31839; 1.
DR Pfam; PF00847; AP2; 1.
DR SMART; SM00380; AP2; 1.
DR SUPFAM; SSF54171; SSF54171; 1.
DR PROSITE; PS51032; AP2_ERF; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Stress response;
KW Transcription; Transcription regulation.
FT CHAIN 1..253
FT /note="Dehydration-responsive element-binding protein 1D"
FT /id="PRO_0000323042"
FT DNA_BIND 39..98
FT /note="AP2/ERF"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 131..153
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..21
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 253 AA; 27668 MW; 754C5F86C86F49A8 CRC64;
MEKNTAASGQ LMTSSAEATP SSPKRPAGRT KFQETRHLVF RGVRWRGCAG RWVCKVRVPG
SRGDRFWIGT SDTAEETART HDAAMLALCG ASASLNFADS AWLLHVPRAP VVSGLRPPAA
RCATRCLQGH RRVPAPGRGS TATATATSGD AASTAPPSAP VLSAKQCEFI FLSSLDCWML
MSKLISSSRA KGSLCLRKNP ISFCMVTNSY TALLLEYIIL QMNSMIVLIH ELSKYQVFLL
LTMITHHLFQ WRR
