DUF3_ARATH
ID DUF3_ARATH Reviewed; 695 AA.
AC Q9FZD9; Q0WMH5;
DT 08-JUN-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 132.
DE RecName: Full=DUF724 domain-containing protein 3 {ECO:0000305};
DE Short=AtDUF3 {ECO:0000303|PubMed:19795213};
GN Name=DUF3 {ECO:0000303|PubMed:19795213};
GN OrderedLocusNames=At1g26540 {ECO:0000312|Araport:AT1G26540};
GN ORFNames=T1K7.9 {ECO:0000312|EMBL:AAF98563.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 246-695.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP FUNCTION, GENE FAMILY, NOMENCLATURE, SUBUNIT, AND DISRUPTION PHENOTYPE.
RX PubMed=19795213; DOI=10.1007/s11103-009-9551-5;
RA Cao X., Yang K.Z., Xia C., Zhang X.Q., Chen L.Q., Ye D.;
RT "Characterization of DUF724 gene family in Arabidopsis thaliana.";
RL Plant Mol. Biol. 72:61-73(2010).
CC -!- FUNCTION: May be involved in the polar growth of plant cells via
CC transportation of RNAs. {ECO:0000305|PubMed:19795213}.
CC -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:19795213}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions. {ECO:0000269|PubMed:19795213}.
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DR EMBL; AC013427; AAF98563.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE30702.1; -; Genomic_DNA.
DR EMBL; AK117551; BAC42212.1; -; mRNA.
DR EMBL; AK229847; BAF01676.1; -; mRNA.
DR PIR; D86392; D86392.
DR RefSeq; NP_173976.1; NM_102416.3.
DR AlphaFoldDB; Q9FZD9; -.
DR SMR; Q9FZD9; -.
DR iPTMnet; Q9FZD9; -.
DR PaxDb; Q9FZD9; -.
DR PRIDE; Q9FZD9; -.
DR ProteomicsDB; 221876; -.
DR EnsemblPlants; AT1G26540.1; AT1G26540.1; AT1G26540.
DR GeneID; 839194; -.
DR Gramene; AT1G26540.1; AT1G26540.1; AT1G26540.
DR KEGG; ath:AT1G26540; -.
DR Araport; AT1G26540; -.
DR TAIR; locus:2197985; AT1G26540.
DR eggNOG; ENOG502QTQX; Eukaryota.
DR HOGENOM; CLU_007138_1_0_1; -.
DR InParanoid; Q9FZD9; -.
DR OMA; TVEYLHW; -.
DR OrthoDB; 211886at2759; -.
DR PhylomeDB; Q9FZD9; -.
DR PRO; PR:Q9FZD9; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9FZD9; baseline and differential.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0042803; F:protein homodimerization activity; IPI:UniProtKB.
DR GO; GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.
DR InterPro; IPR008395; Agenet-like_dom.
DR InterPro; IPR014002; Agenet_dom_plant.
DR InterPro; IPR007930; DUF724.
DR Pfam; PF05641; Agenet; 2.
DR Pfam; PF05266; DUF724; 1.
DR SMART; SM00743; Agenet; 4.
PE 1: Evidence at protein level;
KW Coiled coil; Growth regulation; Reference proteome; Transport.
FT CHAIN 1..695
FT /note="DUF724 domain-containing protein 3"
FT /id="PRO_0000436421"
FT DOMAIN 509..694
FT /note="DUF724"
FT /evidence="ECO:0000255"
FT REGION 376..464
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 614..684
FT /evidence="ECO:0000255"
FT COMPBIAS 385..402
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 413..437
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 438..456
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 300
FT /note="L -> S (in Ref. 4; BAF01676)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 695 AA; 79211 MW; C3619E1F1B3E799D CRC64;
MELQTMKITK DCVVEVSSEE EGFEGAWFRA VLEENPGNSS RRKLRVRYST LLDMDGSSPL
IEHIEQRFIR PVPPEENQQK DVVLEEGLLV DADHKDGWWT GVVVKKMEDD NYLVYFDLPP
DIIQFERKQL RTHLIWTGGT WIQPEIEESN KSMFSPGTMV EVFSAKEAVW SPAMVVKETD
VDDKKKFIVK DCNRYLSCNG DEARPTNIVN SRRVRPIPPP SSVDKYALLE SVETFSGLGW
HKGQVRKILS ENRYTVRLEA TQQESTIRHS DLRPFMVWED GVWYNDLKQK PIKETPPTIL
KRKPMRSCSA AKSMTPTSAT KHLRSFLNSK EISETPTKAK FVSATRELGK NKADAVMNDK
THLLITPQET SIAPVITVTP LKQQDAETEG KKSPKKTPEP VKHQNGLENS STQHEMPEEE
NSNEKSRKRK REQNQNSNLN ETDETCNVSK AGVNGTSDTI RVDDVDDQPL SSWINIPTVL
SSDQSSNVVD NSAADVEETQ AKGALTIEPF TKNLPFWKTY EMEKGYKTVP QNPHFSPLLE
FKEDIREWSA VGMMVSFYGL LEEVKKLQLD VSSSKLGSLS TCFAELEKHG FDIATPQSRI
NKVLSLQVGR AKKVEERKCL EKRIEAEEIE MQKFEHEMVE VERKMLELKR RAEVAKEKKE
AADKMIVEMK SSAETIDQEI ANVELEFITS VLAPW
