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DXR_YERPY
ID   DXR_YERPY               Reviewed;         398 AA.
AC   B1JQG4;
DT   24-MAR-2009, integrated into UniProtKB/Swiss-Prot.
DT   29-APR-2008, sequence version 1.
DT   03-AUG-2022, entry version 84.
DE   RecName: Full=1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00183};
DE            Short=DXP reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00183};
DE            EC=1.1.1.267 {ECO:0000255|HAMAP-Rule:MF_00183};
DE   AltName: Full=1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00183};
DE   AltName: Full=2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00183};
GN   Name=dxr {ECO:0000255|HAMAP-Rule:MF_00183}; OrderedLocusNames=YPK_1070;
OS   Yersinia pseudotuberculosis serotype O:3 (strain YPIII).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Yersiniaceae; Yersinia.
OX   NCBI_TaxID=502800;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=YPIII;
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA   Bruce D., Goodwin L., Pitluck S., Munk A.C., Brettin T., Detter J.C.,
RA   Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L.,
RA   Challacombe J.F., Green L., Lindler L.E., Nikolich M.P., Richardson P.;
RT   "Complete sequence of Yersinia pseudotuberculosis YPIII.";
RL   Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Catalyzes the NADP-dependent rearrangement and reduction of
CC       1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-
CC       phosphate (MEP). {ECO:0000255|HAMAP-Rule:MF_00183}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=2-C-methyl-D-erythritol 4-phosphate + NADP(+) = 1-deoxy-D-
CC         xylulose 5-phosphate + H(+) + NADPH; Xref=Rhea:RHEA:13717,
CC         ChEBI:CHEBI:15378, ChEBI:CHEBI:57783, ChEBI:CHEBI:57792,
CC         ChEBI:CHEBI:58262, ChEBI:CHEBI:58349; EC=1.1.1.267;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_00183};
CC   -!- COFACTOR:
CC       Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_00183};
CC   -!- PATHWAY: Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis
CC       via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-
CC       phosphate: step 1/6. {ECO:0000255|HAMAP-Rule:MF_00183}.
CC   -!- SUBUNIT: Homodimer. {ECO:0000255|HAMAP-Rule:MF_00183}.
CC   -!- SIMILARITY: Belongs to the DXR family. {ECO:0000255|HAMAP-
CC       Rule:MF_00183}.
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DR   EMBL; CP000950; ACA67371.1; -; Genomic_DNA.
DR   RefSeq; WP_002212135.1; NZ_CP009792.1.
DR   PDB; 3IIE; X-ray; 2.21 A; A/B=1-398.
DR   PDBsum; 3IIE; -.
DR   AlphaFoldDB; B1JQG4; -.
DR   SMR; B1JQG4; -.
DR   EnsemblBacteria; ACA67371; ACA67371; YPK_1070.
DR   GeneID; 57977513; -.
DR   KEGG; ypy:YPK_1070; -.
DR   PATRIC; fig|502800.11.peg.1702; -.
DR   OMA; PIDSEHF; -.
DR   UniPathway; UPA00056; UER00092.
DR   EvolutionaryTrace; B1JQG4; -.
DR   GO; GO:0030604; F:1-deoxy-D-xylulose-5-phosphate reductoisomerase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0070402; F:NADPH binding; IEA:InterPro.
DR   GO; GO:0019288; P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; IEA:UniProtKB-UniPathway.
DR   GO; GO:0016114; P:terpenoid biosynthetic process; IEA:UniProtKB-UniRule.
DR   HAMAP; MF_00183; DXP_reductoisom; 1.
DR   InterPro; IPR003821; DXP_reductoisomerase.
DR   InterPro; IPR013644; DXP_reductoisomerase_C.
DR   InterPro; IPR013512; DXP_reductoisomerase_N.
DR   InterPro; IPR026877; DXPR_C.
DR   InterPro; IPR036169; DXPR_C_sf.
DR   InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR   PANTHER; PTHR30525; PTHR30525; 1.
DR   Pfam; PF08436; DXP_redisom_C; 1.
DR   Pfam; PF02670; DXP_reductoisom; 1.
DR   Pfam; PF13288; DXPR_C; 1.
DR   PIRSF; PIRSF006205; Dxp_reductismrs; 1.
DR   SUPFAM; SSF51735; SSF51735; 1.
DR   SUPFAM; SSF69055; SSF69055; 1.
DR   TIGRFAMs; TIGR00243; Dxr; 1.
PE   1: Evidence at protein level;
KW   3D-structure; Isoprene biosynthesis; Metal-binding; NADP; Oxidoreductase.
FT   CHAIN           1..398
FT                   /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
FT                   /id="PRO_1000098532"
FT   BINDING         7..36
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00183"
FT   BINDING         125
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00183"
FT   BINDING         150
FT                   /ligand="a divalent metal cation"
FT                   /ligand_id="ChEBI:CHEBI:60240"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00183"
FT   BINDING         152
FT                   /ligand="a divalent metal cation"
FT                   /ligand_id="ChEBI:CHEBI:60240"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00183"
FT   BINDING         152
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00183"
FT   BINDING         186
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00183"
FT   BINDING         209
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00183"
FT   BINDING         231
FT                   /ligand="a divalent metal cation"
FT                   /ligand_id="ChEBI:CHEBI:60240"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00183"
FT   BINDING         231
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00183"
FT   STRAND          2..8
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           12..23
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   TURN            25..27
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   STRAND          28..34
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           39..49
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   STRAND          52..58
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           59..71
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   STRAND          77..81
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           82..88
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   STRAND          96..99
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           104..106
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           107..115
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   STRAND          119..122
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           126..142
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   STRAND          145..148
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           151..158
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           162..166
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   TURN            167..169
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           174..176
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   STRAND          178..185
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   STRAND          191..193
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           195..200
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   TURN            203..205
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           217..223
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           226..239
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           243..245
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   STRAND          246..250
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   STRAND          256..262
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   STRAND          267..271
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           277..285
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   TURN            312..314
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           316..327
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           329..347
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           355..365
FT                   /evidence="ECO:0007829|PDB:3IIE"
FT   HELIX           375..394
FT                   /evidence="ECO:0007829|PDB:3IIE"
SQ   SEQUENCE   398 AA;  43115 MW;  C9B1FC9E0166D057 CRC64;
     MKQLTILGST GSIGNSTLSV VRANPELFKV TALVAGRNVR EMAQQCLEFS PRYAAMSDEH
     SAKSLRLLLA EQGSDTEVYS GETAACELAA LDDVDQVMAA IVGIAGLPST LAAIRAGKQV
     LLANKESLIT CGKLFMDEVK RSRAQLLPID SEHNAIFQSL PERIQRQLGY SSLNENGVSR
     IILTGSGGPF RETPLSQFSD VTPDQACAHP NWSMGRKISV DSATMMNKGL EYIEARWLFN
     ASAEQIEVVL HPQSVIHSMV RYHDGSILAQ MGTPDMRTPI AHAMAYPMRV SSGVAPLDFC
     KVGALTFTTP DYQRYPCLKL AIDACNAGQA ATTALNAANE ISVMAFLDSK IRFTDIEVIN
     RTVVEGLLLS EPTSVEEVLV IDRKARDVAA QVIAKLNN
 
 
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