EDC3_PONAB
ID EDC3_PONAB Reviewed; 508 AA.
AC Q5RDU9;
DT 22-NOV-2005, integrated into UniProtKB/Swiss-Prot.
DT 21-DEC-2004, sequence version 1.
DT 03-AUG-2022, entry version 77.
DE RecName: Full=Enhancer of mRNA-decapping protein 3;
DE AltName: Full=YjeF domain-containing protein 1;
GN Name=EDC3; Synonyms=YJDC;
OS Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Pongo.
OX NCBI_TaxID=9601;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Brain cortex;
RG The German cDNA consortium;
RL Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Binds single-stranded RNA. Involved in the process of mRNA
CC degradation and in the positive regulation of mRNA decapping (By
CC similarity). {ECO:0000250|UniProtKB:Q96F86}.
CC -!- SUBUNIT: Homodimer (via YjeF N-terminal domain). Forms a complex with
CC DCP1A, DCP2, DDX6 and EDC4/HEDLS, within this complex directly
CC interacts with DCP1A and DDX6. Interacts with ZFP36.
CC {ECO:0000250|UniProtKB:Q96F86}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm, P-body {ECO:0000250}. Note=Processing
CC bodies (PB). {ECO:0000250}.
CC -!- DOMAIN: The DFDF domain is unstructured by itself. It assumes a helical
CC fold upon interaction with DDX6 (By similarity). {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the EDC3 family. {ECO:0000305}.
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DR EMBL; CR857796; CAH90058.1; -; mRNA.
DR RefSeq; NP_001124985.1; NM_001131513.1.
DR AlphaFoldDB; Q5RDU9; -.
DR SMR; Q5RDU9; -.
DR STRING; 9601.ENSPPYP00000007534; -.
DR GeneID; 100171859; -.
DR KEGG; pon:100171859; -.
DR CTD; 80153; -.
DR eggNOG; KOG2585; Eukaryota.
DR InParanoid; Q5RDU9; -.
DR OrthoDB; 870769at2759; -.
DR Proteomes; UP000001595; Unplaced.
DR GO; GO:0000932; C:P-body; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IEA:InterPro.
DR GO; GO:0031087; P:deadenylation-independent decapping of nuclear-transcribed mRNA; IEA:InterPro.
DR CDD; cd01737; LSm16_N; 1.
DR Gene3D; 3.40.50.10260; -; 1.
DR InterPro; IPR025762; DFDF.
DR InterPro; IPR019050; FDF_dom.
DR InterPro; IPR025609; Lsm14-like_N.
DR InterPro; IPR034107; Lsm16_N.
DR InterPro; IPR004443; YjeF_N_dom.
DR InterPro; IPR036652; YjeF_N_dom_sf.
DR Pfam; PF09532; FDF; 1.
DR Pfam; PF12701; LSM14; 1.
DR Pfam; PF03853; YjeF_N; 1.
DR SMART; SM01199; FDF; 1.
DR SMART; SM01271; LSM14; 1.
DR SUPFAM; SSF64153; SSF64153; 1.
DR PROSITE; PS51512; DFDF; 1.
DR PROSITE; PS51385; YJEF_N; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Phosphoprotein; Reference proteome; RNA-binding.
FT CHAIN 1..508
FT /note="Enhancer of mRNA-decapping protein 3"
FT /id="PRO_0000119057"
FT DOMAIN 192..228
FT /note="DFDF"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00845"
FT DOMAIN 283..487
FT /note="YjeF N-terminal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00719"
FT REGION 1..79
FT /note="Required for P-body targeting and interaction with
FT DCP1A"
FT /evidence="ECO:0000250"
FT REGION 89..192
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 191..296
FT /note="Required for interaction with DDX6"
FT /evidence="ECO:0000250"
FT COMPBIAS 91..148
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 155..180
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 131
FT /note="Phosphoserine"
FT /evidence="ECO:0000250|UniProtKB:Q96F86"
FT MOD_RES 138
FT /note="Phosphoserine"
FT /evidence="ECO:0000250|UniProtKB:Q96F86"
FT MOD_RES 140
FT /note="Phosphoserine"
FT /evidence="ECO:0000250|UniProtKB:Q96F86"
FT MOD_RES 161
FT /note="Phosphoserine"
FT /evidence="ECO:0000250|UniProtKB:Q96F86"
SQ SEQUENCE 508 AA; 56101 MW; 08AC0A1DF18745A7 CRC64;
MATDWLGSIV SINCGDSLGV YQGRVSAVDQ VSQTISLTRP FHNGVKCLVP EVTFRAGDIT
ELKILEIPGP GDNQHFGDLH QTELGPSGAG CQVGINQNGT GKLVKKPASS SSAPQNIPKR
TDVKSQDVAV SPQQQQCSKS YVDRHMESLS QSKSFRRRHN SWSSSSRHPN QATPKKSGLK
NGQMKNKDDE CFGDDIEEIP DTDFDFEGNL ALFDKAAVFE EIDTYERRSG TRSRGIPNER
PTRYRHDENI LESEPIVYRR ITVPHNVSKE FCTDSGLVVP SISYELHKKL LSVAEKHGLT
LERRLEMTGV CASQMALTLL GGPNRLNPKN VHQRPTVALL CGPHVKGAQG IRCGRHLANH
DVQVILFLPN FVKMLESITN ELSLFSKTQG QQVSSLKDLP TSPVDLVINC LDCPENVFLR
DQPWYKAAVA WANQNRAPVL SIDPPVHEVE QGIDAKWSLA LGLPLPLGEH AGRIYLCDIG
IPQQVFQEVG INYHSPFGCK FVIPLHSA