EDF1_DANRE
ID EDF1_DANRE Reviewed; 146 AA.
AC Q6PBY3;
DT 12-APR-2005, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Endothelial differentiation-related factor 1 homolog;
DE Short=EDF-1;
GN Name=edf1; ORFNames=zgc:73192, zgc:86829;
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Danionidae; Danioninae; Danio.
OX NCBI_TaxID=7955;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Embryo, and Eye;
RG NIH - Zebrafish Gene Collection (ZGC) project;
RL Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Probable transcriptional coactivator. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
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DR EMBL; BC059541; AAH59541.1; -; mRNA.
DR EMBL; BC071480; AAH71480.1; -; mRNA.
DR RefSeq; NP_957039.1; NM_200745.1.
DR AlphaFoldDB; Q6PBY3; -.
DR SMR; Q6PBY3; -.
DR STRING; 7955.ENSDARP00000026769; -.
DR PaxDb; Q6PBY3; -.
DR Ensembl; ENSDART00000015940; ENSDARP00000026769; ENSDARG00000009950.
DR GeneID; 793036; -.
DR KEGG; dre:793036; -.
DR CTD; 8721; -.
DR ZFIN; ZDB-GENE-040426-1710; edf1.
DR eggNOG; KOG3398; Eukaryota.
DR GeneTree; ENSGT00390000008519; -.
DR HOGENOM; CLU_112609_0_1_1; -.
DR InParanoid; Q6PBY3; -.
DR OMA; NKAHQGT; -.
DR OrthoDB; 1571466at2759; -.
DR PhylomeDB; Q6PBY3; -.
DR TreeFam; TF300064; -.
DR PRO; PR:Q6PBY3; -.
DR Proteomes; UP000000437; Genome assembly.
DR Proteomes; UP000814640; Chromosome 5.
DR Bgee; ENSDARG00000009950; Expressed in early embryo and 26 other tissues.
DR ExpressionAtlas; Q6PBY3; baseline.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 1.10.260.40; -; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR013729; MBF1_N.
DR Pfam; PF01381; HTH_3; 1.
DR Pfam; PF08523; MBF1; 1.
DR SMART; SM00530; HTH_XRE; 1.
DR SUPFAM; SSF47413; SSF47413; 1.
DR PROSITE; PS50943; HTH_CROC1; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..146
FT /note="Endothelial differentiation-related factor 1
FT homolog"
FT /id="PRO_0000149799"
FT DOMAIN 80..134
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00257"
FT DNA_BIND 91..110
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00257"
FT REGION 13..53
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 14..28
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 146 AA; 16075 MW; 47289767375177E1 CRC64;
MAECDWDTVT VLRKKGSAAQ SKSKQAVTAA QRKGEAVETS KKWAAGQNKQ HVVTKNTAKL
DRETEELSHQ RVPLEVGKVI QQGRQNKGLT QKDLATKINE KPQIIAEYEC GKAIPNNQVM
GKIERAIGLK LRGKDIGLPL EACSKK