EF104_ARATH
ID EF104_ARATH Reviewed; 241 AA.
AC Q9FKG1; Q8L909; Q9C5M2;
DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 126.
DE RecName: Full=Ethylene-responsive transcription factor ERF104;
GN Name=ERF104; OrderedLocusNames=At5g61600; ORFNames=K11J9.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9734815; DOI=10.1093/dnares/5.3.203;
RA Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
RT features of the regions of 1,367,185 bp covered by 19 physically assigned
RT P1 and TAC clones.";
RL DNA Res. 5:203-216(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16407444; DOI=10.1104/pp.105.073783;
RA Nakano T., Suzuki K., Fujimura T., Shinshi H.;
RT "Genome-wide analysis of the ERF gene family in Arabidopsis and rice.";
RL Plant Physiol. 140:411-432(2006).
CC -!- FUNCTION: Probably acts as a transcriptional activator. Binds to the
CC GCC-box pathogenesis-related promoter element. May be involved in the
CC regulation of gene expression by stress factors and by components of
CC stress signal transduction pathways (By similarity). {ECO:0000250}.
CC -!- INTERACTION:
CC Q9FKG1; Q39026: MPK6; NbExp=3; IntAct=EBI-2360943, EBI-349548;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. ERF
CC subfamily. {ECO:0000305}.
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DR EMBL; AB012239; BAB09004.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97495.1; -; Genomic_DNA.
DR EMBL; AF360149; AAK25859.1; -; mRNA.
DR EMBL; AY054228; AAL06888.1; -; mRNA.
DR EMBL; AY142636; AAN13094.1; -; mRNA.
DR EMBL; AY088694; AAM67014.1; -; mRNA.
DR RefSeq; NP_200968.1; NM_125553.3.
DR AlphaFoldDB; Q9FKG1; -.
DR SMR; Q9FKG1; -.
DR BioGRID; 21525; 6.
DR DIP; DIP-48849N; -.
DR IntAct; Q9FKG1; 4.
DR STRING; 3702.AT5G61600.1; -.
DR PaxDb; Q9FKG1; -.
DR PRIDE; Q9FKG1; -.
DR ProteomicsDB; 224729; -.
DR EnsemblPlants; AT5G61600.1; AT5G61600.1; AT5G61600.
DR GeneID; 836281; -.
DR Gramene; AT5G61600.1; AT5G61600.1; AT5G61600.
DR KEGG; ath:AT5G61600; -.
DR Araport; AT5G61600; -.
DR TAIR; locus:2151591; AT5G61600.
DR eggNOG; ENOG502RXE3; Eukaryota.
DR HOGENOM; CLU_058713_0_0_1; -.
DR InParanoid; Q9FKG1; -.
DR OMA; MENYCSS; -.
DR OrthoDB; 1352200at2759; -.
DR PhylomeDB; Q9FKG1; -.
DR PRO; PR:Q9FKG1; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FKG1; baseline and differential.
DR Genevisible; Q9FKG1; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0051301; P:cell division; IEP:TAIR.
DR GO; GO:0050832; P:defense response to fungus; IMP:TAIR.
DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0010087; P:phloem or xylem histogenesis; IEP:TAIR.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:TAIR.
DR CDD; cd00018; AP2; 1.
DR Gene3D; 3.30.730.10; -; 1.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR Pfam; PF00847; AP2; 1.
DR PRINTS; PR00367; ETHRSPELEMNT.
DR SMART; SM00380; AP2; 1.
DR SUPFAM; SSF54171; SSF54171; 1.
DR PROSITE; PS51032; AP2_ERF; 1.
PE 1: Evidence at protein level;
KW Activator; DNA-binding; Ethylene signaling pathway; Nucleus;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..241
FT /note="Ethylene-responsive transcription factor ERF104"
FT /id="PRO_0000290417"
FT DNA_BIND 87..145
FT /note="AP2/ERF"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT REGION 37..87
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 162..203
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 37..75
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 162..190
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 171
FT /note="G -> S (in Ref. 4; AAM67014)"
FT /evidence="ECO:0000305"
FT CONFLICT 207
FT /note="P -> S (in Ref. 3; AAK25859)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 241 AA; 26825 MW; 086C0930A63339DC CRC64;
MATKQEALAI DFISQHLLTD FVSMETDHPS LFTNQLHNFH SETGPRTITN QSPKPNSTLN
QRKPPLPNLS VSRTVSTKTE KEEEERHYRG VRRRPWGKYA AEIRDPNKKG CRIWLGTYDT
AVEAGRAYDQ AAFQLRGRKA ILNFPLDVRV TSETCSGEGV IGLGKRKRDK GSPPEEEKAA
RVKVEEEESN TSETTEAEVE PVVPLTPSSW MGFWDVGAGD GIFSIPPLSP TSPNFSVISV
T