EF1B_ORYSJ
ID EF1B_ORYSJ Reviewed; 224 AA.
AC P29545; Q0D3W6; Q8H2U3;
DT 01-APR-1993, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 3.
DT 03-AUG-2022, entry version 137.
DE RecName: Full=Elongation factor 1-beta;
DE Short=EF-1-beta;
DE AltName: Full=Elongation factor 1-beta';
DE Short=EF-1-beta';
DE AltName: Full=Elongation factor 1B-alpha 2;
DE AltName: Full=eEF-1B alpha 2;
GN OrderedLocusNames=Os07g0662500, LOC_Os07g46750; ORFNames=P0453E03.116;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Hayayuki; TISSUE=Flower;
RX PubMed=1397289; DOI=10.1016/0014-5793(92)81363-q;
RA Matsumoto S., Oizumi N., Taira H., Ejiri S.;
RT "Cloning and sequencing of the cDNA encoding rice elongation factor 1
RT beta'.";
RL FEBS Lett. 311:46-48(1992).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP PROTEIN SEQUENCE OF 2-8 AND 2-11.
RC STRAIN=cv. Nipponbare; TISSUE=Callus, and Stem;
RX PubMed=14681440; DOI=10.1093/nar/gkh020;
RA Komatsu S., Kojima K., Suzuki K., Ozaki K., Higo K.;
RT "Rice proteome database based on two-dimensional polyacrylamide gel
RT electrophoresis: its status in 2003.";
RL Nucleic Acids Res. 32:D388-D392(2004).
CC -!- FUNCTION: EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound
CC to EF-1-alpha to GTP.
CC -!- SUBUNIT: EF-1 is composed of 4 subunits: alpha, beta (1B-alpha=beta'),
CC delta (1B-beta), and gamma (1B-gamma). {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the EF-1-beta/EF-1-delta family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA02253.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; D12821; BAA02253.1; ALT_FRAME; mRNA.
DR EMBL; AP005452; BAC22427.2; -; Genomic_DNA.
DR EMBL; AP008213; BAF22457.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT03068.1; -; Genomic_DNA.
DR EMBL; AK061761; BAG88096.1; -; mRNA.
DR EMBL; AK098892; BAG93798.1; -; mRNA.
DR EMBL; AK121942; BAH00728.1; -; mRNA.
DR PIR; S29224; S29224.
DR RefSeq; XP_015646711.1; XM_015791225.1.
DR AlphaFoldDB; P29545; -.
DR SMR; P29545; -.
DR STRING; 4530.OS07T0662500-01; -.
DR PaxDb; P29545; -.
DR PRIDE; P29545; -.
DR EnsemblPlants; Os07t0662500-01; Os07t0662500-01; Os07g0662500.
DR GeneID; 4344188; -.
DR Gramene; Os07t0662500-01; Os07t0662500-01; Os07g0662500.
DR KEGG; osa:4344188; -.
DR eggNOG; KOG1668; Eukaryota.
DR HOGENOM; CLU_050172_3_0_1; -.
DR InParanoid; P29545; -.
DR OMA; FEVKPWD; -.
DR OrthoDB; 1464823at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; P29545; OS.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005853; C:eukaryotic translation elongation factor 1 complex; IEA:InterPro.
DR GO; GO:0005085; F:guanyl-nucleotide exchange factor activity; IBA:GO_Central.
DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006414; P:translational elongation; IBA:GO_Central.
DR CDD; cd00292; EF1B; 1.
DR Gene3D; 3.30.70.60; -; 1.
DR InterPro; IPR036219; eEF-1beta-like_sf.
DR InterPro; IPR014038; EF1B_bsu/dsu_GNE.
DR InterPro; IPR036282; Glutathione-S-Trfase_C_sf.
DR InterPro; IPR014717; Transl_elong_EF1B/ribosomal_S6.
DR InterPro; IPR001326; Transl_elong_EF1B_B/D_CS.
DR Pfam; PF00736; EF1_GNE; 1.
DR SMART; SM00888; EF1_GNE; 1.
DR SUPFAM; SSF47616; SSF47616; 1.
DR SUPFAM; SSF54984; SSF54984; 1.
DR PROSITE; PS00824; EF1BD_1; 1.
DR PROSITE; PS00825; EF1BD_2; 1.
PE 1: Evidence at protein level;
KW Direct protein sequencing; Elongation factor; Protein biosynthesis;
KW Reference proteome.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0000269|PubMed:14681440"
FT CHAIN 2..224
FT /note="Elongation factor 1-beta"
FT /id="PRO_0000155033"
SQ SEQUENCE 224 AA; 23800 MW; 16AB12BC774229E5 CRC64;
MAVTFTDLHT ADGLKALEQH LSGKTYVSGN AISKDDIKVF AAVPSKPGAE FPNAARWYDT
VAAALASRFP GKAVGVNLPG GGAASSAAAA APAAKDADED DDDLDLFGDE TEEDKKAADE
RAASKASSKK KESGKSSVLL DVKPWDDETD MKKLEEAVRS VQMEGLTWGA SKLVPVGYGI
KKLQIMLTIV DDLVSVDSLI EEHLTEEPIN EFVQSCDIVA FNKI
