EF1D1_ORYSJ
ID EF1D1_ORYSJ Reviewed; 229 AA.
AC Q40680; Q0D4P5; Q7EYW8;
DT 15-JUL-1999, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 3.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Elongation factor 1-delta 1;
DE Short=EF-1-delta 1;
DE AltName: Full=Elongation factor 1B-beta 1;
DE AltName: Full=eEF-1B beta 1;
GN OrderedLocusNames=Os07g0614500, LOC_Os07g42300; ORFNames=P0616D06.117;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Hayayuki; TISSUE=Anther;
RX PubMed=8307147; DOI=10.1016/0014-5793(94)80125-8;
RA Matsumoto S., Terui Y., Shixiong X., Taira H., Ejiri S.;
RT "Cloning and characterization of the cDNA encoding rice elongation factor 1
RT beta.";
RL FEBS Lett. 338:103-106(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound
CC to EF-1-alpha to GTP.
CC -!- SUBUNIT: EF-1 is composed of 4 subunits: alpha, beta (1B-alpha=beta'),
CC delta (1B-beta), and gamma (1B-gamma). {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the EF-1-beta/EF-1-delta family. {ECO:0000305}.
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DR EMBL; D23674; BAA04903.1; -; mRNA.
DR EMBL; AP005198; BAC16499.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF22178.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02636.1; -; Genomic_DNA.
DR EMBL; AK061069; BAG87710.1; -; mRNA.
DR EMBL; AK071736; BAG92661.1; -; mRNA.
DR PIR; S41086; S41086.
DR RefSeq; XP_015647859.1; XM_015792373.1.
DR AlphaFoldDB; Q40680; -.
DR SMR; Q40680; -.
DR IntAct; Q40680; 2.
DR STRING; 4530.OS07T0614500-01; -.
DR PaxDb; Q40680; -.
DR PRIDE; Q40680; -.
DR EnsemblPlants; Os07t0614500-01; Os07t0614500-01; Os07g0614500.
DR GeneID; 4343894; -.
DR Gramene; Os07t0614500-01; Os07t0614500-01; Os07g0614500.
DR KEGG; osa:4343894; -.
DR eggNOG; KOG1668; Eukaryota.
DR HOGENOM; CLU_050172_3_0_1; -.
DR InParanoid; Q40680; -.
DR OMA; MSKFQLV; -.
DR OrthoDB; 1464823at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR ExpressionAtlas; Q40680; baseline and differential.
DR Genevisible; Q40680; OS.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005853; C:eukaryotic translation elongation factor 1 complex; IEA:InterPro.
DR GO; GO:0005085; F:guanyl-nucleotide exchange factor activity; IBA:GO_Central.
DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006414; P:translational elongation; IBA:GO_Central.
DR CDD; cd00292; EF1B; 1.
DR Gene3D; 3.30.70.60; -; 1.
DR InterPro; IPR036219; eEF-1beta-like_sf.
DR InterPro; IPR014038; EF1B_bsu/dsu_GNE.
DR InterPro; IPR036282; Glutathione-S-Trfase_C_sf.
DR InterPro; IPR014717; Transl_elong_EF1B/ribosomal_S6.
DR InterPro; IPR001326; Transl_elong_EF1B_B/D_CS.
DR Pfam; PF00736; EF1_GNE; 1.
DR SMART; SM00888; EF1_GNE; 1.
DR SUPFAM; SSF47616; SSF47616; 1.
DR SUPFAM; SSF54984; SSF54984; 1.
DR PROSITE; PS00824; EF1BD_1; 1.
DR PROSITE; PS00825; EF1BD_2; 1.
PE 2: Evidence at transcript level;
KW Elongation factor; Protein biosynthesis; Reference proteome.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0000250"
FT CHAIN 2..229
FT /note="Elongation factor 1-delta 1"
FT /id="PRO_0000155037"
FT REGION 80..109
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 229 AA; 24863 MW; FEBB4194CBBED0D1 CRC64;
MAVSFTNVSS EAGLKKLDEY LLTRSYISGY QASNDDLAVY SAFSTAPSSS YTNVARWFTH
IDALLRLSGV TADGQGVKVE STAVPSASTP DVADAKAPAA DDDDDDDVDL FGEETEEEKK
AAEERAAAVK ASGKKKESGK SSVLLDVKPW DDETDMTKLE EAVRNVKMEG LLWGASKLVP
VGYGIKKLQI MMTIVDDLVS VDSLIEDYFY TEPANEYIQS CDIVAFNKI
