EF1D2_ORYSJ
ID EF1D2_ORYSJ Reviewed; 226 AA.
AC Q40682; Q10JV7; Q9ZNV2;
DT 21-MAR-2006, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 3.
DT 03-AUG-2022, entry version 128.
DE RecName: Full=Elongation factor 1-delta 2;
DE Short=EF-1-delta 2;
DE AltName: Full=Elongation factor 1B-beta 2;
DE AltName: Full=eEF-1B beta 2;
GN OrderedLocusNames=Os03g0406200, LOC_Os03g29260; ORFNames=OSJNBa0002D18.20;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=9804992; DOI=10.1016/s0167-4781(98)00153-5;
RA Terui Y., Tsutsumi K., Kidou S., Sawazaki T., Kuroiwa Y., Yamaki M.,
RA Ejiri S.;
RT "A novel variant of translation elongation factor-1beta: isolation and
RT characterization of the rice gene encoding EF-1beta2.";
RL Biochim. Biophys. Acta 1442:369-372(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 34-226.
RC STRAIN=cv. Tainung 67; TISSUE=Endosperm;
RA Krishnan H.B.;
RL Submitted (SEP-1994) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound
CC to EF-1-alpha to GTP.
CC -!- SUBUNIT: EF-1 is composed of 4 subunits: alpha, beta (1B-alpha=beta'),
CC delta (1B-beta), and gamma (1B-gamma). {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the EF-1-beta/EF-1-delta family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAA33904.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; D83726; BAA34598.1; -; Genomic_DNA.
DR EMBL; D83727; BAA34599.1; -; mRNA.
DR EMBL; AC134886; AAU89237.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF96519.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12247.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84634.1; -; Genomic_DNA.
DR EMBL; AK059914; BAG87209.1; -; mRNA.
DR EMBL; AK073405; BAG93440.1; -; mRNA.
DR EMBL; L36094; AAA33904.1; ALT_INIT; mRNA.
DR PIR; JC4144; JC4144.
DR RefSeq; XP_015627792.1; XM_015772306.1.
DR AlphaFoldDB; Q40682; -.
DR SMR; Q40682; -.
DR IntAct; Q40682; 4.
DR STRING; 4530.OS03T0406200-01; -.
DR PaxDb; Q40682; -.
DR PRIDE; Q40682; -.
DR EnsemblPlants; Os03t0406200-01; Os03t0406200-01; Os03g0406200.
DR EnsemblPlants; Os03t0406200-02; Os03t0406200-02; Os03g0406200.
DR GeneID; 4333079; -.
DR Gramene; Os03t0406200-01; Os03t0406200-01; Os03g0406200.
DR Gramene; Os03t0406200-02; Os03t0406200-02; Os03g0406200.
DR KEGG; osa:4333079; -.
DR eggNOG; KOG1668; Eukaryota.
DR HOGENOM; CLU_050172_3_0_1; -.
DR InParanoid; Q40682; -.
DR OMA; WSYTDSK; -.
DR OrthoDB; 1464823at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q40682; OS.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005853; C:eukaryotic translation elongation factor 1 complex; IEA:InterPro.
DR GO; GO:0005085; F:guanyl-nucleotide exchange factor activity; IBA:GO_Central.
DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006414; P:translational elongation; IBA:GO_Central.
DR CDD; cd00292; EF1B; 1.
DR Gene3D; 3.30.70.60; -; 1.
DR InterPro; IPR036219; eEF-1beta-like_sf.
DR InterPro; IPR014038; EF1B_bsu/dsu_GNE.
DR InterPro; IPR036282; Glutathione-S-Trfase_C_sf.
DR InterPro; IPR014717; Transl_elong_EF1B/ribosomal_S6.
DR InterPro; IPR001326; Transl_elong_EF1B_B/D_CS.
DR Pfam; PF00736; EF1_GNE; 1.
DR SMART; SM00888; EF1_GNE; 1.
DR SUPFAM; SSF47616; SSF47616; 1.
DR SUPFAM; SSF54984; SSF54984; 1.
DR PROSITE; PS00824; EF1BD_1; 1.
DR PROSITE; PS00825; EF1BD_2; 1.
PE 2: Evidence at transcript level;
KW Elongation factor; Protein biosynthesis; Reference proteome.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0000250"
FT CHAIN 2..226
FT /note="Elongation factor 1-delta 2"
FT /id="PRO_0000228122"
FT REGION 82..131
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 96..110
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 111..131
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 146
FT /note="P -> A (in Ref. 7; AAA33904)"
FT /evidence="ECO:0000305"
FT CONFLICT 150..181
FT /note="ETDMAKLEEAVRNVKMEGLLWGASKLVPVGYG -> GNRHGKAWRKLLRNFE
FT DGGPALGWIQTLYQLGYC (in Ref. 7)"
FT /evidence="ECO:0000305"
FT CONFLICT 185
FT /note="L -> F (in Ref. 7; AAA33904)"
FT /evidence="ECO:0000305"
FT CONFLICT 223
FT /note="F -> V (in Ref. 7; AAA33904)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 226 AA; 24655 MW; 427FD3FDFDC25E2E CRC64;
MAITLSNVNS EAGLQKLDEY LLTRSYISGY QASKDDMTVF TSLPSAPAAS YVNVTRWYDH
ISALLRSSGV TAEGEGVKVE STACSVSPTA DQKAPAADEE DDDDVDLFGE ETEEEKKAAE
ERAAAVKASG KKKESGKSSV LLDVKPWDDE TDMAKLEEAV RNVKMEGLLW GASKLVPVGY
GIKKLQIMMT IVDDLVSVDS LIEDYFYTEP ANEFIQSCDI VAFNKI
