EGY3_ORYSJ
ID EGY3_ORYSJ Reviewed; 586 AA.
AC Q851F9; A0A0P0W2J2;
DT 16-APR-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=Probable zinc metalloprotease EGY3, chloroplastic;
DE EC=3.4.24.-;
DE AltName: Full=Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 3;
DE Short=OsEGY3;
DE Flags: Precursor;
GN Name=EGY3; OrderedLocusNames=Os03g0729000, LOC_Os03g51920;
GN ORFNames=OsJ_12438, OSJNBb0011H13.3;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY.
RX PubMed=15659096; DOI=10.1111/j.1365-313x.2004.02308.x;
RA Chen G., Bi Y.R., Li N.;
RT "EGY1 encodes a membrane-associated and ATP-independent metalloprotease
RT that is required for chloroplast development.";
RL Plant J. 41:364-375(2005).
CC -!- FUNCTION: Probable membrane-associated metalloprotease that may be
CC involved in chloroplast development. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast membrane {ECO:0000305};
CC Multi-pass membrane protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the peptidase M50B family. {ECO:0000305}.
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DR EMBL; AC120983; AAO38476.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF98676.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF13065.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS86198.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ28457.1; -; Genomic_DNA.
DR EMBL; AK108046; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015627827.1; XM_015772341.1.
DR AlphaFoldDB; Q851F9; -.
DR STRING; 4530.OS03T0729000-01; -.
DR PaxDb; Q851F9; -.
DR PRIDE; Q851F9; -.
DR EnsemblPlants; Os03t0729000-01; Os03t0729000-01; Os03g0729000.
DR GeneID; 4333985; -.
DR Gramene; Os03t0729000-01; Os03t0729000-01; Os03g0729000.
DR KEGG; osa:4333985; -.
DR eggNOG; ENOG502QQ7R; Eukaryota.
DR HOGENOM; CLU_032693_0_0_1; -.
DR InParanoid; Q851F9; -.
DR OMA; DRYAWGF; -.
DR OrthoDB; 1393607at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q851F9; OS.
DR GO; GO:0031969; C:chloroplast membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0008237; F:metallopeptidase activity; IEA:UniProtKB-KW.
DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR GO; GO:0009651; P:response to salt stress; IEA:EnsemblPlants.
DR InterPro; IPR044838; EGY1-like.
DR PANTHER; PTHR31412; PTHR31412; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Coiled coil; Hydrolase; Membrane; Metalloprotease; Plastid;
KW Protease; Reference proteome; Transit peptide; Transmembrane;
KW Transmembrane helix.
FT TRANSIT 1..54
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 55..586
FT /note="Probable zinc metalloprotease EGY3, chloroplastic"
FT /id="PRO_0000428651"
FT TRANSMEM 287..307
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 318..338
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 389..409
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 427..447
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 454..474
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 506..526
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 550..570
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 13..32
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 58..122
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 103..195
FT /evidence="ECO:0000255"
FT CONFLICT 574
FT /note="S -> G (in Ref. 6; AK108046)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 586 AA; 62795 MW; 9101DAF8C184EA95 CRC64;
MASSSLVTSL LFSSSSSSNT ATSTSSRRSF SLFSKNQYCK PRPLRRSSSR LLVRCSLQQQ
QEEKAAPAAE SHHAGGGQDD AATASHHAVE GENGVADADG GGVKKSKEEL EEEEQQEVDW
RSDEEFKRFM GNPSIEAAIK LEKKRADRKL RELDREPDAN PLAGLLRGLA RGQLAREKER
LELAENTFKA LDLNKLKSCF GYDTFFAVDV RRFGDGGIFI GNLRKPVEEV RPKLEKKIAE
AAGTDVTLWF MEEKNDDITK QVCMVQPKAE IDLQLEITKL STPWGYLSAV ALAVTTFGTI
AIMSGFFLKP GATFDDYVSD VLPLFAGFLS ILGVSEIATR LTAARYGVKL SPSFLVPSNW
TGCLGVMNNY ESLLPNKKAL FDIPVARAAS AYLTSVALAV SAFVSDGSLN GGKNALFVRP
EFFYNNPLLS FVQAVIGPYA DELGNVLPNA VEGVGVPVDP LAFAGLLGIV VTSLNLLPCG
RLEGGRIAQA LFGRGAAAVL SFATSVALGA GAIIGGSVLC LAWGLFATFV RGGEEIPAQD
EITPLGSERY AWGLVLAVVC LLTLFPNGGG TYSSDFLGAP FFRGGI
