EHD1_ORYSJ
ID EHD1_ORYSJ Reviewed; 341 AA.
AC Q7Y0W5; A0A0P0XVG5; Q7G2N3; Q7Y0W4; Q8H908;
DT 16-JUN-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=Two-component response regulator ORR30 {ECO:0000305};
DE AltName: Full=Protein EARLY HEADING DATE 1 {ECO:0000303|PubMed:15078816};
DE AltName: Full=Two-component response regulator EHD1 {ECO:0000305};
GN Name=EHD1 {ECO:0000303|PubMed:15078816};
GN Synonyms=RR30 {ECO:0000303|PubMed:17284581};
GN OrderedLocusNames=Os10g0463400 {ECO:0000312|EMBL:BAT11189.1},
GN LOC_Os10g32600 {ECO:0000312|EMBL:AAP54164.2};
GN ORFNames=OsJ_31808 {ECO:0000312|EMBL:EEE51097.1}, OSJNBa0071K18.25;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, INDUCTION, POLYMORPHISM,
RP VARIANT ARG-219, AND CHARACTERIZATION OF VARIANT ARG-219.
RC STRAIN=cv. Nipponbare, and cv. Taichung 65;
RX PubMed=15078816; DOI=10.1101/gad.1189604;
RA Doi K., Izawa T., Fuse T., Yamanouchi U., Kubo T., Shimatani Z., Yano M.,
RA Yoshimura A.;
RT "Ehd1, a B-type response regulator in rice, confers short-day promotion of
RT flowering and controls FT-like gene expression independently of Hd1.";
RL Genes Dev. 18:926-936(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12791992; DOI=10.1126/science.1083523;
RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17284581; DOI=10.1104/pp.106.093666;
RA Schaller G.E., Doi K., Hwang I., Kieber J.J., Khurana J.P., Kurata N.,
RA Mizuno T., Pareek A., Shiu S.H., Wu P., Yip W.K.;
RT "Nomenclature for two-component signaling elements of rice.";
RL Plant Physiol. 143:555-557(2007).
CC -!- FUNCTION: Transcriptional activator that acts as floral inducer to
CC promote short-day (SD) flowering pathway. Activates HD3A and other FT-
CC like genes independently from HD1. May also activate MADS-box
CC transcription factors involved in flowering regulation
CC (PubMed:15078816). Functions as a response regulator involved in His-
CC to-Asp phosphorelay signal transduction system. Phosphorylation of the
CC Asp residue in the receiver domain activates the ability of the protein
CC to promote the transcription of target genes. May directly activate
CC some type-A response regulators in response to cytokinins (By
CC similarity). {ECO:0000250|UniProtKB:Q940D0,
CC ECO:0000269|PubMed:15078816}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00625}.
CC -!- INDUCTION: Daily oscillation and diurnal expression in plants grown in
CC short day (SD) but not in long day (LD) conditions.
CC {ECO:0000269|PubMed:15078816}.
CC -!- PTM: Two-component system major event consists of a His-to-Asp
CC phosphorelay between a sensor histidine kinase (HK) and a response
CC regulator (RR). In plants, the His-to-Asp phosphorelay involves an
CC additional intermediate named Histidine-containing phosphotransfer
CC protein (HPt). This multistep phosphorelay consists of a His-Asp-His-
CC Asp sequential transfer of a phosphate group between first an His and
CC an Asp of the HK protein, followed by the transfer to a conserved His
CC of the HPt protein and finally the transfer to an Asp in the receiver
CC domain of the RR protein.
CC -!- POLYMORPHISM: The cultivar Taichung 65 exhibits a long basic vegetative
CC growth and reduced response to photoperiod due to loss-of-function
CC alleles of HD1 and EHD1. This confers almost constant and sufficient
CC vegetative growth periods even in low latitudes where short photoperiod
CC conditions continue almost throughout the year.
CC -!- SIMILARITY: Belongs to the ARR family. Type-B subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAN05536.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAP54164.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EEE51097.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB092506; BAC77078.1; -; Genomic_DNA.
DR EMBL; AB092507; BAC77079.1; -; Genomic_DNA.
DR EMBL; AC027038; AAN05536.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000086; AAP54164.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008207; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP014966; BAT11189.1; -; Genomic_DNA.
DR EMBL; CM000147; EEE51097.1; ALT_SEQ; Genomic_DNA.
DR RefSeq; XP_015613931.1; XM_015758445.1.
DR RefSeq; XP_015613932.1; XM_015758446.1.
DR RefSeq; XP_015613933.1; XM_015758447.1.
DR AlphaFoldDB; Q7Y0W5; -.
DR SMR; Q7Y0W5; -.
DR STRING; 4530.OS10T0463400-01; -.
DR PaxDb; Q7Y0W5; -.
DR PRIDE; Q7Y0W5; -.
DR EnsemblPlants; Os10t0463400-01; Os10t0463400-01; Os10g0463400.
DR Gramene; Os10t0463400-01; Os10t0463400-01; Os10g0463400.
DR KEGG; osa:107276289; -.
DR eggNOG; KOG1601; Eukaryota.
DR HOGENOM; CLU_957670_0_0_1; -.
DR InParanoid; Q7Y0W5; -.
DR OMA; FRWDSDK; -.
DR OrthoDB; 332559at2759; -.
DR PlantReactome; R-OSA-8934036; Long day regulated expression of florigens.
DR PlantReactome; R-OSA-8934108; Short day regulated expression of florigens.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000000763; Chromosome 10.
DR Proteomes; UP000007752; Chromosome 10.
DR Proteomes; UP000059680; Chromosome 10.
DR Genevisible; Q7Y0W5; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0009736; P:cytokinin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW.
DR GO; GO:0048576; P:positive regulation of short-day photoperiodism, flowering; IMP:UniProtKB.
DR InterPro; IPR045279; ARR-like.
DR InterPro; IPR011006; CheY-like_superfamily.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR017053; Response_reg_B-typ_pln.
DR InterPro; IPR001789; Sig_transdc_resp-reg_receiver.
DR PANTHER; PTHR43874; PTHR43874; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR Pfam; PF00072; Response_reg; 1.
DR PIRSF; PIRSF036392; RR_ARR_type-B; 1.
DR SMART; SM00448; REC; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR SUPFAM; SSF52172; SSF52172; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
DR PROSITE; PS50110; RESPONSE_REGULATORY; 1.
PE 1: Evidence at protein level;
KW Activator; Cytokinin signaling pathway; DNA-binding; Flowering; Nucleus;
KW Phosphoprotein; Reference proteome; Transcription;
KW Transcription regulation; Two-component regulatory system.
FT CHAIN 1..341
FT /note="Two-component response regulator ORR30"
FT /id="PRO_0000377038"
FT DOMAIN 12..127
FT /note="Response regulatory"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00169"
FT DOMAIN 195..254
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 225..250
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT MOD_RES 63
FT /note="4-aspartylphosphate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00169"
FT VARIANT 219
FT /note="G -> R (in strain: cv. Taichung 65; strong reduction
FT of DNA-binding activity)"
FT /evidence="ECO:0000269|PubMed:15078816"
SQ SEQUENCE 341 AA; 38863 MW; 783161F1015EC4C8 CRC64;
MDHRELWPYG LRVLVIDDDC SYLSVMEDLL LKCSYKVTTY KNVREAVPFI LDNPQIVDLV
ISDAFFPTED GLLILQEVTS KFGIPTVIMA SSGDTNTVMK YVANGAFDFL LKPVRIEELS
NIWQHIFRKQ MQDHKNNNMV GNLEKPGHPP SILAMARATP ATTRSTATEA SLAPLENEVR
DDMVNYNGEI TDIRDLGKSR LTWTTQLHRQ FIAAVNHLGE DKAVPKKILG IMKVKHLTRE
QVASHLQKYR MQLKKSIPTT SKHGATLSST ALDKTQDHPS RSQYFNQDGC KEIMDYSLPR
DDLSSGSECM LEELNDYSSE GFQDFRWDSD KQEYGPCFWN F
