EHD3_ORYSJ
ID EHD3_ORYSJ Reviewed; 563 AA.
AC Q6ZJM9;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 132.
DE RecName: Full=PHD finger protein EHD3 {ECO:0000305};
DE AltName: Full=Proetin EARLY HEADING 3 {ECO:0000303|PubMed:21284756};
GN Name=EHD3 {ECO:0000303|PubMed:21284756};
GN OrderedLocusNames=Os08g0105000 {ECO:0000312|EMBL:BAF22697.1},
GN LOC_Os08g01420 {ECO:0000305};
GN ORFNames=OJ1300_E01.8-1 {ECO:0000312|EMBL:BAD08931.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], FUNCTION, SUBCELLULAR LOCATION,
RP TISSUE SPECIFICITY, INDUCTION, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Tohoku IL9;
RX PubMed=21284756; DOI=10.1111/j.1365-313x.2011.04517.x;
RA Matsubara K., Yamanouchi U., Nonoue Y., Sugimoto K., Wang Z.-X., Minobe Y.,
RA Yano M.;
RT "Ehd3, encoding a plant homeodomain finger-containing protein, is a
RT critical promoter of rice flowering.";
RL Plant J. 66:603-612(2011).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP INTERACTION WITH TRX1, AND SUBCELLULAR LOCATION.
RX PubMed=24420930; DOI=10.1104/pp.113.228049;
RA Choi S.C., Lee S., Kim S.R., Lee Y.S., Liu C., Cao X., An G.;
RT "Trithorax group protein Oryza sativa Trithorax1 controls flowering time in
RT rice via interaction with early heading date3.";
RL Plant Physiol. 164:1326-1337(2014).
CC -!- FUNCTION: Probable transcription factor involved in the regulation of
CC floral induction under long day (LD) conditions. Promotes photoperiodic
CC flowering by repressing GHD7, a major floral repressor. Seems to
CC function independently of HD1. {ECO:0000269|PubMed:21284756}.
CC -!- SUBUNIT: Interacts with TRX1. {ECO:0000269|PubMed:24420930}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:21284756,
CC ECO:0000269|PubMed:24420930}.
CC -!- TISSUE SPECIFICITY: Expressed in shoot apical meristem and leaves.
CC {ECO:0000269|PubMed:21284756}.
CC -!- INDUCTION: Circadian-regulation under short day (SD) conditions.
CC Expression increases after dawn, peaks just before dusk and gradually
CC decreases during the dark period. {ECO:0000269|PubMed:21284756}.
CC -!- DISRUPTION PHENOTYPE: Late-flowering phenotype under short day (SD) and
CC natural day (ND) conditions. Extreme late-flowering phenotype under
CC long day (LD) conditions. {ECO:0000269|PubMed:21284756}.
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DR EMBL; AB517624; BAI77460.1; -; Genomic_DNA.
DR EMBL; AB517626; BAI77462.1; -; mRNA.
DR EMBL; AP003909; BAD08931.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF22697.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT03438.1; -; Genomic_DNA.
DR EMBL; AK102613; BAG95636.1; -; mRNA.
DR RefSeq; XP_015648278.1; XM_015792792.1.
DR AlphaFoldDB; Q6ZJM9; -.
DR SMR; Q6ZJM9; -.
DR STRING; 4530.OS08T0105000-01; -.
DR PaxDb; Q6ZJM9; -.
DR PRIDE; Q6ZJM9; -.
DR EnsemblPlants; Os08t0105000-01; Os08t0105000-01; Os08g0105000.
DR EnsemblPlants; Os08t0105000-02; Os08t0105000-02; Os08g0105000.
DR GeneID; 4344443; -.
DR Gramene; Os08t0105000-01; Os08t0105000-01; Os08g0105000.
DR Gramene; Os08t0105000-02; Os08t0105000-02; Os08g0105000.
DR KEGG; osa:4344443; -.
DR eggNOG; ENOG502QQIW; Eukaryota.
DR HOGENOM; CLU_017556_1_0_1; -.
DR InParanoid; Q6ZJM9; -.
DR OMA; NNGRSHE; -.
DR OrthoDB; 698056at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR ExpressionAtlas; Q6ZJM9; baseline and differential.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0042393; F:histone binding; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003712; F:transcription coregulator activity; IBA:GO_Central.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IBA:GO_Central.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0048586; P:regulation of long-day photoperiodism, flowering; IMP:UniProtKB.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 3.
DR SUPFAM; SSF57903; SSF57903; 3.
DR PROSITE; PS01359; ZF_PHD_1; 3.
DR PROSITE; PS50016; ZF_PHD_2; 2.
PE 1: Evidence at protein level;
KW DNA-binding; Flowering; Metal-binding; Nucleus; Reference proteome; Repeat;
KW Transcription; Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..563
FT /note="PHD finger protein EHD3"
FT /id="PRO_0000437426"
FT ZN_FING 296..348
FT /note="PHD-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00146"
FT ZN_FING 420..472
FT /note="PHD-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00146"
FT ZN_FING 474..524
FT /note="PHD-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00146"
FT REGION 1..46
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 13..33
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 563 AA; 62201 MW; 5E1358BF3DAFC32B CRC64;
MGSQNRPPPP RKRQPPPPED HLVTYKRRRS KETQPLPLMA NGANSKKDAK AQHWISWRDT
LHGFLQSPAI SQGGGIQTCI RHALQHNPCL LTNGVVVHTE FKGNPAHSQG EEAKVQHPNG
AAGGKVVSAD AAIQDAAAAA SSEANKAMCN NALFDILVSQ KFALLCHLLL GTFHVNKPGD
VIDLEKIDAK MRNGDYAHNP ALFDDDIQQM WEKFEQVGQE MTGLASNLST ISRVSYQKQA
SGFSEAEVAE HRIEEISLPG AVHVVTKEST TTVQLAPCDS SHSTIPKRTV PPGRDLCPCD
GCGTKVDVEE GLICDECDTM YHFACVKLLN PDIKQVPAIW HCSTCSFKKK ELAADTTNNV
AHDCLHGGNC VLCDQLELVK TEEEDPKLPI KIELAEEREG SSVSSMGEDN EPDLSTTALS
NLCKHCGTCE DDDKRFMVCG HPYCVYKFYH IRCLKTSQLA IEQQKKLGCW YCPSCLCRGC
FQDKDDDQIV MCDGCDEGYH IYCMRPARNT IPKGKWYCTF CKIRRAAEGM HKYEDSVLKI
HGNSKHACNV NQSKDSEGDG TEK
