ELF32_ORYSJ
ID ELF32_ORYSJ Reviewed; 742 AA.
AC Q657D6; B9EXL0;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 05-OCT-2016, sequence version 2.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=ELF3-like protein 2 {ECO:0000305};
GN Name=ELF3-2 {ECO:0000305};
GN OrderedLocusNames=Os01g0566100 {ECO:0000312|EMBL:BAF05275.1},
GN LOC_Os01g38530 {ECO:0000305};
GN ORFNames=OsJ_02258 {ECO:0000312|EMBL:EEE54823.1},
GN P0697C12.26 {ECO:0000312|EMBL:BAD45081.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, AND INDUCTION.
RX PubMed=25757473; DOI=10.1105/tpc.114.135582;
RA Matsuzaki J., Kawahara Y., Izawa T.;
RT "Punctual transcriptional regulation by the rice circadian clock under
RT fluctuating field conditions.";
RL Plant Cell 27:633-648(2015).
CC -!- FUNCTION: Involved in the regulation of flowering time.
CC {ECO:0000305|PubMed:25757473}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q9SNQ6}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q657D6-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q657D6-2; Sequence=VSP_058518, VSP_058519;
CC -!- INDUCTION: Circadian-regulation. Expression increases after midnight,
CC peaks just at dawn and gradually decreases during the daytime.
CC {ECO:0000269|PubMed:25757473}.
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DR EMBL; AP003296; BAD45081.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF05275.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS72753.1; -; Genomic_DNA.
DR EMBL; CM000138; EEE54823.1; -; Genomic_DNA.
DR EMBL; AK065173; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015650888.1; XM_015795402.1. [Q657D6-1]
DR AlphaFoldDB; Q657D6; -.
DR STRING; 4530.OS01T0566100-01; -.
DR PaxDb; Q657D6; -.
DR PRIDE; Q657D6; -.
DR EnsemblPlants; Os01t0566100-01; Os01t0566100-01; Os01g0566100. [Q657D6-2]
DR EnsemblPlants; Os01t0566100-02; Os01t0566100-02; Os01g0566100. [Q657D6-1]
DR GeneID; 4327931; -.
DR Gramene; Os01t0566100-01; Os01t0566100-01; Os01g0566100. [Q657D6-2]
DR Gramene; Os01t0566100-02; Os01t0566100-02; Os01g0566100. [Q657D6-1]
DR KEGG; osa:4327931; -.
DR eggNOG; ENOG502QSB6; Eukaryota.
DR HOGENOM; CLU_064191_0_0_1; -.
DR InParanoid; Q657D6; -.
DR OrthoDB; 245514at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:2000028; P:regulation of photoperiodism, flowering; IEA:InterPro.
DR InterPro; IPR039319; ELF3-like.
DR PANTHER; PTHR34281; PTHR34281; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Flowering; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..742
FT /note="ELF3-like protein 2"
FT /id="PRO_0000437429"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 115..163
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 186..248
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 280..337
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 451..523
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 665..726
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 344..349
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT COMPBIAS 1..19
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 207..227
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 294..333
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 496..523
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 684..726
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 396
FT /note="N -> K (in isoform 2)"
FT /id="VSP_058518"
FT VAR_SEQ 397..742
FT /note="Missing (in isoform 2)"
FT /id="VSP_058519"
SQ SEQUENCE 742 AA; 79846 MW; 708F657AE8B0EE7B CRC64;
MRGGGGGGKE VEERGKVMGP LFPRLHVNDA AKGGGPRAPP RNKMALYEQF TVPSHRFSGG
GGALASARGS LARSTSAASQ SQVYGCDMPL FEPFNVPSNG PGQSVEKMNS NSVNRQINGS
RKDSGMLSTQ PKGIDKYGSG SRAECAPQQR VEKGIKSSSG RKLADDDEFI VPSVFSARFP
QYSTKERAGV QEESTPLVAL SPHKSPPAVS KSPTKCYNTV SKNLERINVS DVKSRGSQKD
KETGPAQTLK NVEVEHFSSF EASKDMFGSK HAKVCPKTGT INDLDEPHLE NSEHQATSRN
GSSVKFQNPP VRRNTISAKP SPGIENTNGH CNLPQGGLKE AGTKRKRLEA QDNAEKIDDL
SDSSVECITA WEISPDEIVG AIGAKHFWKA RRAIINQQRV FAAQVFELHK LVKVQKLIAA
SPHVLIEGDP CLGNALLASK KKMAEENLKA QPVLVATNDD VQPSLQEPEL SKENSEENPP
SPRDTAPVSG HHDQTAKIGA SKSNLRATPV ASDNRQNNCG VQLQPPQNQW LIPVMSPSEG
LVYKPYSGPC PPAGSILAPF YANCTPLRLP STTGDFMNSA YGVPIPHQPQ HMGAPGTPTM
PMNYFPPFSV PVMNPVALAS AVEQGRHPSM PQPYGNLEQH SRMSCNMSHP SGIWRFHASR
DSEAQASSAS SPFDRLQCGG SGPVSAFPTA SAQNTQPQPS SGSRDNQTNV IRVIPHNNSQ
TASESAARIF RSIQMERQQD DS
