ID   AGL90_ARATH             Reviewed;         320 AA.
AC   Q7XJK5;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   24-MAR-2009, sequence version 2.
DT   03-AUG-2022, entry version 112.
DE   RecName: Full=Agamous-like MADS-box protein AGL90;
GN   Name=AGL90; OrderedLocusNames=At5g27960; ORFNames=F15F15.30;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=12837945; DOI=10.1105/tpc.011544;
RA   Parenicova L., de Folter S., Kieffer M., Horner D.S., Favalli C.,
RA   Busscher J., Cook H.E., Ingram R.M., Kater M.M., Davies B., Angenent G.C.,
RA   Colombo L.;
RT   "Molecular and phylogenetic analyses of the complete MADS-box transcription
RT   factor family in Arabidopsis: new openings to the MADS world.";
RL   Plant Cell 15:1538-1551(2003).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA   Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA   Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA   Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA   O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA   Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA   Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA   Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA   Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA   Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA   Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA   Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA   McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA   Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA   Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA   Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA   Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA   Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA   Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL   Nature 408:823-826(2000).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [4]
RP   INTERACTION WITH AGL62.
RX   PubMed=15805477; DOI=10.1105/tpc.105.031831;
RA   de Folter S., Immink R.G.H., Kieffer M., Parenicova L., Henz S.R.,
RA   Weigel D., Busscher M., Kooiker M., Colombo L., Kater M.M., Davies B.,
RA   Angenent G.C.;
RT   "Comprehensive interaction map of the Arabidopsis MADS Box transcription
RT   factors.";
RL   Plant Cell 17:1424-1433(2005).
CC   -!- FUNCTION: Probable transcription factor.
CC   -!- SUBUNIT: Interacts with AGL62. {ECO:0000269|PubMed:15805477}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00251}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AY141249; AAN52813.1; -; mRNA.
DR   EMBL; AC007627; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CP002688; AED93751.1; -; Genomic_DNA.
DR   RefSeq; NP_198148.2; NM_122679.2.
DR   AlphaFoldDB; Q7XJK5; -.
DR   BioGRID; 18139; 7.
DR   IntAct; Q7XJK5; 7.
DR   STRING; 3702.AT5G27960.1; -.
DR   PaxDb; Q7XJK5; -.
DR   PRIDE; Q7XJK5; -.
DR   ProteomicsDB; 244675; -.
DR   EnsemblPlants; AT5G27960.1; AT5G27960.1; AT5G27960.
DR   GeneID; 832865; -.
DR   Gramene; AT5G27960.1; AT5G27960.1; AT5G27960.
DR   KEGG; ath:AT5G27960; -.
DR   Araport; AT5G27960; -.
DR   TAIR; locus:2143769; AT5G27960.
DR   eggNOG; KOG0014; Eukaryota.
DR   HOGENOM; CLU_053053_7_1_1; -.
DR   InParanoid; Q7XJK5; -.
DR   OrthoDB; 1315166at2759; -.
DR   PhylomeDB; Q7XJK5; -.
DR   PRO; PR:Q7XJK5; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q7XJK5; baseline.
DR   Genevisible; Q7XJK5; AT.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR   GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR   GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR   GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   CDD; cd00266; MADS_SRF_like; 1.
DR   Gene3D; 3.40.1810.10; -; 1.
DR   InterPro; IPR033897; MADS_SRF-like.
DR   InterPro; IPR002100; TF_MADSbox.
DR   InterPro; IPR036879; TF_MADSbox_sf.
DR   Pfam; PF00319; SRF-TF; 1.
DR   PRINTS; PR00404; MADSDOMAIN.
DR   SMART; SM00432; MADS; 1.
DR   SUPFAM; SSF55455; SSF55455; 1.
DR   PROSITE; PS50066; MADS_BOX_2; 1.
PE   1: Evidence at protein level;
KW   Coiled coil; DNA-binding; Nucleus; Reference proteome; Transcription;
KW   Transcription regulation.
FT   CHAIN           1..320
FT                   /note="Agamous-like MADS-box protein AGL90"
FT                   /id="PRO_0000363653"
FT   DOMAIN          1..59
FT                   /note="MADS-box"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT   COILED          80..115
FT                   /evidence="ECO:0000255"
FT   CONFLICT        294
FT                   /note="L -> H (in Ref. 1; AAN52813)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   320 AA;  36730 MW;  7C0402D63E7C228A CRC64;
     MKKVKLSLIA NERSRKTSFM KRKNGIFKKL HELSTLCGVQ ACALIYSPFI PVPESWPSRE
     GAKKVASKFL EMPRTARTRK MMDQETHLME RITKAKEQLK NLAAENRELQ VRRFMFDCVE
     GKMSQYRYDA KDLQDLLSCM NLYLDQLNGR IESIKENGES LLSSVSPFPT RIGVDEIGDE
     SFSDSPIHST TRVVDTPNAT NPHVLAGDMT PFLDADANAN MNQVQYQAPN NLFNQIQREF
     YNINLNLNLN LNSNQYLNQQ QSFMNPMVEQ HMNHVGGRES IPFVDRNYYN YNQLPAVDLA
     STSYMPSTTD VYDPYINNNL