EP1L1_ARATH
ID EP1L1_ARATH Reviewed; 455 AA.
AC Q9ZVA1; Q8L854;
DT 07-JUN-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 25-MAY-2022, entry version 143.
DE RecName: Full=EP1-like glycoprotein 1 {ECO:0000303|PubMed:16891401};
DE Flags: Precursor;
GN OrderedLocusNames=At1g78820 {ECO:0000312|Araport:AT1G78820};
GN ORFNames=F9K20.13 {ECO:0000312|EMBL:AAC83044.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP DISRUPTION PHENOTYPE.
RX PubMed=16891401; DOI=10.1105/tpc.106.042200;
RA Khanna R., Shen Y., Toledo-Ortiz G., Kikis E.A., Johannesson H.,
RA Hwang Y.-S., Quail P.H.;
RT "Functional profiling reveals that only a small number of phytochrome-
RT regulated early-response genes in Arabidopsis are necessary for optimal
RT deetiolation.";
RL Plant Cell 18:2157-2171(2006).
RN [5]
RP INDUCTION BY RED LIGHT.
RX PubMed=17076805; DOI=10.1111/j.1365-313x.2006.02914.x;
RA Tepperman J.M., Hwang Y.S., Quail P.H.;
RT "phyA dominates in transduction of red-light signals to rapidly responding
RT genes at the initiation of Arabidopsis seedling de-etiolation.";
RL Plant J. 48:728-742(2006).
RN [6]
RP SUBCELLULAR LOCATION.
RX PubMed=18796151; DOI=10.1186/1471-2229-8-94;
RA Irshad M., Canut H., Borderies G., Pont-Lezica R., Jamet E.;
RT "A new picture of cell wall protein dynamics in elongating cells of
RT Arabidopsis thaliana: confirmed actors and newcomers.";
RL BMC Plant Biol. 8:94-94(2008).
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall
CC {ECO:0000269|PubMed:18796151}.
CC -!- INDUCTION: Up-regulated by continuous red light.
CC {ECO:0000269|PubMed:17076805}.
CC -!- DISRUPTION PHENOTYPE: Defect in both hypocotyl and cotyledon
CC photoresponsiveness during deetiolation. {ECO:0000269|PubMed:16891401}.
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DR EMBL; AC005679; AAC83044.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE36159.1; -; Genomic_DNA.
DR EMBL; AY035116; AAK59621.1; -; mRNA.
DR EMBL; AY056346; AAL07195.1; -; mRNA.
DR EMBL; AY062708; AAL32786.1; -; mRNA.
DR EMBL; AY093367; AAM13366.1; -; mRNA.
DR EMBL; AY120736; AAM53294.1; -; mRNA.
DR PIR; E96817; E96817.
DR RefSeq; NP_178003.1; NM_106530.3.
DR AlphaFoldDB; Q9ZVA1; -.
DR SMR; Q9ZVA1; -.
DR STRING; 3702.AT1G78820.1; -.
DR PaxDb; Q9ZVA1; -.
DR PRIDE; Q9ZVA1; -.
DR ProteomicsDB; 220618; -.
DR EnsemblPlants; AT1G78820.1; AT1G78820.1; AT1G78820.
DR GeneID; 844219; -.
DR Gramene; AT1G78820.1; AT1G78820.1; AT1G78820.
DR KEGG; ath:AT1G78820; -.
DR Araport; AT1G78820; -.
DR TAIR; locus:2037563; AT1G78820.
DR eggNOG; ENOG502QU13; Eukaryota.
DR HOGENOM; CLU_043351_0_0_1; -.
DR InParanoid; Q9ZVA1; -.
DR OMA; GMCVGCP; -.
DR OrthoDB; 556631at2759; -.
DR PhylomeDB; Q9ZVA1; -.
DR PRO; PR:Q9ZVA1; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9ZVA1; baseline and differential.
DR GO; GO:0048046; C:apoplast; HDA:TAIR.
DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
DR CDD; cd00028; B_lectin; 1.
DR Gene3D; 2.90.10.10; -; 1.
DR InterPro; IPR001480; Bulb-type_lectin_dom.
DR InterPro; IPR036426; Bulb-type_lectin_dom_sf.
DR InterPro; IPR003609; Pan_app.
DR InterPro; IPR035446; SLSG/EP1.
DR Pfam; PF01453; B_lectin; 1.
DR PIRSF; PIRSF002686; SLG; 1.
DR SMART; SM00108; B_lectin; 1.
DR SUPFAM; SSF51110; SSF51110; 1.
DR PROSITE; PS50927; BULB_LECTIN; 1.
DR PROSITE; PS50948; PAN; 1.
PE 2: Evidence at transcript level;
KW Cell wall; Disulfide bond; Glycoprotein; Lectin; Reference proteome;
KW S-nitrosylation; Secreted; Signal.
FT SIGNAL 1..22
FT /evidence="ECO:0000255"
FT CHAIN 23..455
FT /note="EP1-like glycoprotein 1"
FT /evidence="ECO:0000255"
FT /id="PRO_5009974821"
FT DOMAIN 43..163
FT /note="Bulb-type lectin"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00038"
FT DOMAIN 374..455
FT /note="PAN"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00315"
FT MOD_RES 374
FT /note="S-nitrosocysteine"
FT /evidence="ECO:0000250|UniProtKB:Q9ZVA2"
FT CARBOHYD 106
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 191
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 211
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 241
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 289
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 446
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT DISULFID 410..432
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00315"
FT DISULFID 414..420
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00315"
FT CONFLICT 44
FT /note="E -> K (in Ref. 3; AAM53294)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 455 AA; 50594 MW; 2ECB4DFE4599F7D4 CRC64;
MLRFDYLLIT ALAISTVSVV MAQVPPEKQF RVLNEPGYAP YITEYDASYR FLNSPNQNFF
TIPFQLMFYN TTPSAYVLAL RVGTRRDMSF TRWIWDANRN NPVGDNSTLS FGRNGNLVLA
ELNGQVKWQT NTANKGVTGF QILPNGNMVL HDKHGKFVWQ SFDHPTDTLL VGQSLKVNGV
NKLVSRTSDM NGSDGPYSMV LDNKGLTMYV NKTGTPLVYG GWTDHDFRGT VTFAVTREFD
NLTEPSAYEL LLEPAPQPAT NPGNNRRLLQ VRPIGSGGGT LNLNKINYNG TISYLRLGSD
GSLKAFSYFP AATYLEWEET FAFFSNYFVR QCGLPTFCGD YGYCDRGMCV GCPTPKGLLA
WSDKCAPPKT TQFCSGGKGK AVNYYKIVGV EHFTGPYVND GQGPTSVNDC KAKCDRDCKC
LGYFYKEKDK KCLLAPLLGT LIKDANTSSV AYIKY
