AGO1D_ORYSJ
ID AGO1D_ORYSJ Reviewed; 1038 AA.
AC Q5Z5B2; A0A0P0X188;
DT 07-JUL-2009, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Protein argonaute 1D;
DE Short=OsAGO1d;
GN Name=AGO1D; OrderedLocusNames=Os06g0729300, LOC_Os06g51310;
GN ORFNames=OSJNBa0069C14.10-1;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18826656; DOI=10.1186/1471-2164-9-451;
RA Kapoor M., Arora R., Lama T., Nijhawan A., Khurana J.P., Tyagi A.K.,
RA Kapoor S.;
RT "Genome-wide identification, organization and phylogenetic analysis of
RT dicer-like, argonaute and RNA-dependent RNA polymerase gene families and
RT their expression analysis during reproductive development and stress in
RT rice.";
RL BMC Genomics 9:451-451(2008).
CC -!- FUNCTION: Probably involved in the RNA silencing pathway. May bind to
CC short RNAs such as microRNAs (miRNAs) or short interfering RNAs
CC (siRNAs), and represses the translation of mRNAs which are
CC complementary to them (By similarity). {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the argonaute family. Ago subfamily.
CC {ECO:0000305}.
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DR EMBL; AP005750; BAD62111.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF20562.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS99632.1; -; Genomic_DNA.
DR EMBL; AK111500; BAG99281.1; -; mRNA.
DR RefSeq; XP_015642511.1; XM_015787025.1.
DR RefSeq; XP_015642512.1; XM_015787026.1.
DR AlphaFoldDB; Q5Z5B2; -.
DR SMR; Q5Z5B2; -.
DR STRING; 4530.OS06T0729300-01; -.
DR PaxDb; Q5Z5B2; -.
DR PRIDE; Q5Z5B2; -.
DR EnsemblPlants; Os06t0729300-01; Os06t0729300-01; Os06g0729300.
DR GeneID; 4342138; -.
DR Gramene; Os06t0729300-01; Os06t0729300-01; Os06g0729300.
DR KEGG; osa:4342138; -.
DR eggNOG; KOG1041; Eukaryota.
DR HOGENOM; CLU_004544_0_1_1; -.
DR InParanoid; Q5Z5B2; -.
DR OMA; IIQMVNH; -.
DR OrthoDB; 159407at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR ExpressionAtlas; Q5Z5B2; baseline and differential.
DR Genevisible; Q5Z5B2; OS.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0004521; F:endoribonuclease activity; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0035194; P:post-transcriptional gene silencing by RNA; IBA:GO_Central.
DR CDD; cd04657; Piwi_ago-like; 1.
DR Gene3D; 3.30.420.10; -; 1.
DR InterPro; IPR014811; ArgoL1.
DR InterPro; IPR032472; ArgoL2.
DR InterPro; IPR032473; Argonaute_Mid_dom.
DR InterPro; IPR032474; Argonaute_N.
DR InterPro; IPR003100; PAZ_dom.
DR InterPro; IPR036085; PAZ_dom_sf.
DR InterPro; IPR003165; Piwi.
DR InterPro; IPR045246; Piwi_ago-like.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR Pfam; PF08699; ArgoL1; 1.
DR Pfam; PF16488; ArgoL2; 1.
DR Pfam; PF16487; ArgoMid; 1.
DR Pfam; PF16486; ArgoN; 1.
DR Pfam; PF02170; PAZ; 1.
DR Pfam; PF02171; Piwi; 1.
DR SMART; SM01163; DUF1785; 1.
DR SMART; SM00949; PAZ; 1.
DR SMART; SM00950; Piwi; 1.
DR SUPFAM; SSF101690; SSF101690; 1.
DR SUPFAM; SSF53098; SSF53098; 1.
DR PROSITE; PS50821; PAZ; 1.
DR PROSITE; PS50822; PIWI; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; RNA-mediated gene silencing.
FT CHAIN 1..1038
FT /note="Protein argonaute 1D"
FT /id="PRO_0000378428"
FT DOMAIN 379..493
FT /note="PAZ"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00142"
FT DOMAIN 669..990
FT /note="Piwi"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00150"
FT REGION 1..58
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 110..135
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 992..1021
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 992..1015
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1038 AA; 115924 MW; 3865C37A0063189E CRC64;
MGSRRPRLPG FGEDCEPRGG GRGGGGRGRG SYYPQAQQYH PQGHGGRGGA GYYHGAAPQP
RGAMVVQQWR PATAAAEHLG HQQPYNSSVR PQHYYGPSAI APELLQAMDA PHEPPANVSS
PEAASPEASS PRSLALEVTE QLQDLSVQYQ LSESQEEIVQ HVPVSTKSFK FPHRPGSGSI
GTRCLVKANH FFAQLPDKDL HQYDVSITPE LTSRIRSRAV MEELVRLHKM SYLGGRLPAY
DGRKSLYTAG PLPFTSKEFR ISLLEEDDGS GSERRQKTYN VVIKFAARAD LHRLEQFLAG
RQAEAPQEAL QVLDIVLREL PTARYAPFGR SFFSPDLGRR RSLGEGLETW RGFYQSIRPT
QMGLSLNIDM SATAFFEPLP VIDFVIQLLN TDIRSRPLSD AERVKIKKAL RGVKVGVTHR
GNMRRKYRIS GLTSQATREL TFPVDQGGTV KSVVQYFQET YGFAIQHTYL PCLQVGNQQR
PNYLPMEVCK IVEGQRYSKR LNQNQIRALL EETCQRPHDR ERDIIQMVNH NSYHEDPYAK
EFGIKISERL ALVEARILPA PRLKYNETGR EKDCLPRVGQ WNMMNKKMVN GGRVRSWICV
NFARNVQESV ASGFCRELAR MCQASGMDFA LEPVLPSMYA RPDQVERALK ARFHDAMNIL
GPQHKELDLL IGLLPDNNGS LYGDLKRICE IDLGLVSQCC CTKQVFKMNK QILANLALKI
NVKVGGRNTV LVDAVSRRIP LVTDRPTIIF GADVTHPHPG EDSSPSIAAV VASQDWPEVT
KYAGLVSAQS HRQELIDDLY NITHDPHRGP ICGGMVRELL ISFKRSTGQK PQRIIFYRDG
VSEGQFYQVL LHELDAIRKA CASLEANYQP QVTFIVVQKR HHTRLFAHNH NDQNSVDRSG
NILPGTVVDS KICHPTEFDF FLCSHAGIKG TSRPAHYHVL WDENNFTADA LQTLTNNLCY
TYARCTRSVS IVPPAYYAHL AAFRARFYME SDSSDSGSMA SGRGGGSSTS RSTRAAGGGA
VRPLPALKDS VKNVMFYC
