AGP26_ARATH
ID AGP26_ARATH Reviewed; 136 AA.
AC Q94F57; O82260;
DT 12-DEC-2006, integrated into UniProtKB/Swiss-Prot.
DT 12-DEC-2006, sequence version 2.
DT 25-MAY-2022, entry version 83.
DE RecName: Full=Classical arabinogalactan protein 26;
DE Flags: Precursor;
GN Name=AGP26; OrderedLocusNames=At2g47930; ORFNames=F17A22, T9J23.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12177459; DOI=10.1104/pp.003459;
RA Schultz C.J., Rumsewicz M.P., Johnson K.L., Jones B.J., Gaspar Y.M.,
RA Bacic A.;
RT "Using genomic resources to guide research directions. The arabinogalactan
RT protein gene family as a test case.";
RL Plant Physiol. 129:1448-1463(2002).
CC -!- FUNCTION: Proteoglycan that seems to be implicated in diverse
CC developmental roles such as differentiation, cell-cell recognition,
CC embryogenesis and programmed cell death.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Lipid-anchor, GPI-
CC anchor {ECO:0000305}.
CC -!- PTM: O-glycosylated on the hydroxyproline residues. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the classical AGP family. {ECO:0000305}.
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DR EMBL; AC005309; AAC63647.1; -; Genomic_DNA.
DR EMBL; AC006072; AAM15130.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10913.1; -; Genomic_DNA.
DR EMBL; AF385686; AAK60279.1; -; mRNA.
DR EMBL; AY078007; AAL77708.1; -; mRNA.
DR PIR; C84921; C84921.
DR RefSeq; NP_566114.1; NM_130360.3.
DR AlphaFoldDB; Q94F57; -.
DR BioGRID; 4740; 3.
DR IntAct; Q94F57; 3.
DR STRING; 3702.AT2G47930.1; -.
DR PaxDb; Q94F57; -.
DR EnsemblPlants; AT2G47930.1; AT2G47930.1; AT2G47930.
DR GeneID; 819405; -.
DR Gramene; AT2G47930.1; AT2G47930.1; AT2G47930.
DR KEGG; ath:AT2G47930; -.
DR Araport; AT2G47930; -.
DR TAIR; locus:2043383; AT2G47930.
DR eggNOG; ENOG502S95S; Eukaryota.
DR HOGENOM; CLU_121177_0_0_1; -.
DR InParanoid; Q94F57; -.
DR OMA; IHAVQYS; -.
DR OrthoDB; 1630412at2759; -.
DR PRO; PR:Q94F57; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q94F57; baseline and differential.
DR Genevisible; Q94F57; AT.
DR GO; GO:0031225; C:anchored component of membrane; TAS:TAIR.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR InterPro; IPR039346; AGP25/26.
DR PANTHER; PTHR35725; PTHR35725; 1.
PE 2: Evidence at transcript level;
KW Cell membrane; Glycoprotein; GPI-anchor; Lipoprotein; Membrane;
KW Proteoglycan; Reference proteome; Signal.
FT SIGNAL 1..21
FT /evidence="ECO:0000255"
FT CHAIN 22..108
FT /note="Classical arabinogalactan protein 26"
FT /id="PRO_0000269007"
FT PROPEP 109..136
FT /note="Removed in mature form"
FT /evidence="ECO:0000255"
FT /id="PRO_0000269008"
FT REGION 38..95
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 38..79
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT LIPID 108
FT /note="GPI-anchor amidated serine"
FT /evidence="ECO:0000255"
FT CONFLICT 76
FT /note="P -> T (in Ref. 3; AAL77708/AAK60279)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 136 AA; 13983 MW; EF8E757376416685 CRC64;
MSVSLFTAFT VLSLCLHTST SEFQLSTISA APSFLPEAPS SFSASTPAMS PDTSPLFPTP
GSSEMSPSPS ESSIMPTIPS SLSPPNPDAV TPDPLLEVSP VGSPLPASSS VCLVSSQLSS
LLLVLLMLLL AFCSFF
