AGP30_ARATH
ID AGP30_ARATH Reviewed; 239 AA.
AC P93013;
DT 29-APR-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1997, sequence version 1.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=Non-classical arabinogalactan protein 30 {ECO:0000303|PubMed:14535889};
DE Short=AtAGP30 {ECO:0000303|PubMed:14535889};
DE Flags: Precursor;
GN Name=AGP30 {ECO:0000303|PubMed:14535889};
GN OrderedLocusNames=At2g33790 {ECO:0000312|Araport:AT2G33790};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP FUNCTION, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, AND DISRUPTION
RP PHENOTYPE.
RX PubMed=14535889; DOI=10.1046/j.1365-313x.2003.01874.x;
RA van Hengel A.J., Roberts K.;
RT "AtAGP30, an arabinogalactan-protein in the cell walls of the primary root,
RT plays a role in root regeneration and seed germination.";
RL Plant J. 36:256-270(2003).
CC -!- FUNCTION: Proteoglycan required for the timing of seed germination. May
CC function in the abscisic acid (ABA) response.
CC {ECO:0000269|PubMed:14535889}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall
CC {ECO:0000250|UniProtKB:Q9FZA2}.
CC -!- TISSUE SPECIFICITY: Specifically expressed in root tips.
CC {ECO:0000269|PubMed:14535889}.
CC -!- DEVELOPMENTAL STAGE: Expressed in embryos from the initiation of
CC germination. {ECO:0000269|PubMed:14535889}.
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions, but freshly harvested seeds of mutant plants show reduced
CC seed dormancy. {ECO:0000269|PubMed:14535889}.
CC -!- MISCELLANEOUS: Over-expression of AGP30 severely affects shoot
CC development. {ECO:0000269|PubMed:14535889}.
CC -!- SIMILARITY: Belongs to the non-classical AGP family. {ECO:0000305}.
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DR EMBL; U78721; AAC69131.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC08885.1; -; Genomic_DNA.
DR EMBL; BT002866; AAO22683.1; -; mRNA.
DR EMBL; BT020350; AAV85705.1; -; mRNA.
DR PIR; F84749; F84749.
DR RefSeq; NP_180935.1; NM_128938.3.
DR AlphaFoldDB; P93013; -.
DR SMR; P93013; -.
DR STRING; 3702.AT2G33790.1; -.
DR iPTMnet; P93013; -.
DR PaxDb; P93013; -.
DR PRIDE; P93013; -.
DR ProteomicsDB; 244844; -.
DR EnsemblPlants; AT2G33790.1; AT2G33790.1; AT2G33790.
DR GeneID; 817946; -.
DR Gramene; AT2G33790.1; AT2G33790.1; AT2G33790.
DR KEGG; ath:AT2G33790; -.
DR Araport; AT2G33790; -.
DR TAIR; locus:2057604; AT2G33790.
DR eggNOG; ENOG502QPUY; Eukaryota.
DR HOGENOM; CLU_055714_1_0_1; -.
DR InParanoid; P93013; -.
DR OMA; WIMPKLL; -.
DR OrthoDB; 1430187at2759; -.
DR PhylomeDB; P93013; -.
DR PRO; PR:P93013; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; P93013; baseline and differential.
DR Genevisible; P93013; AT.
DR GO; GO:0071944; C:cell periphery; IBA:GO_Central.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:2000280; P:regulation of root development; IMP:UniProtKB.
DR GO; GO:2000033; P:regulation of seed dormancy process; IMP:UniProtKB.
PE 2: Evidence at transcript level;
KW Cell wall; Glycoprotein; Proteoglycan; Reference proteome; Secreted;
KW Signal.
FT SIGNAL 1..24
FT /evidence="ECO:0000255"
FT CHAIN 25..239
FT /note="Non-classical arabinogalactan protein 30"
FT /evidence="ECO:0000255"
FT /id="PRO_0000432825"
FT CARBOHYD 106
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
SQ SEQUENCE 239 AA; 25761 MW; 582C132A8B5604C9 CRC64;
MGIIGKSVSL TLFALLCFTS SVFTLGVNQP GSSDPFHSLP QHLPLPPIKL PTLPPAKAPI
KLPAYPPAKA PIKLPTLPPA KAPIKLPTLP PIKPPVLPPV YPPKYNKTLV AVRGVVYCKA
CKYAGVNNVQ GAKPVKDAVV RLVCKNKKNS ISETKTDKNG YFMLLAPKTV TNYDIKGCRA
FLVKSPDTKC SKVSSLHDGG KGSVLKPVLK PGFSSTIMRW FKYSVYNVGP FAFEPTCPK
