ERF42_ARATH
ID ERF42_ARATH Reviewed; 225 AA.
AC Q52QU1; O82315; Q6E268; Q6J9Q5; Q94K31;
DT 21-AUG-2007, integrated into UniProtKB/Swiss-Prot.
DT 24-MAY-2005, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=Ethylene-responsive transcription factor ERF042;
GN Name=ERF042; OrderedLocusNames=At2g25820; ORFNames=F17H15.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, AND INDUCTION BY DROUGHT.
RC STRAIN=cv. Columbia;
RX PubMed=16307362; DOI=10.1007/s11103-005-1511-0;
RA Feng J.-X., Liu D., Pan Y., Gong W., Ma L.-G., Luo J.-C., Deng X.-W.,
RA Zhu Y.-X.;
RT "An annotation update via cDNA sequence analysis and comprehensive
RT profiling of developmental, hormonal or environmental responsiveness of the
RT Arabidopsis AP2/EREBP transcription factor gene family.";
RL Plant Mol. Biol. 59:853-868(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Xiao Y.-L., Underwood B.A., Moskal W.A. Jr., Torian U., Redman J.C.,
RA Wu H.C., Utterback T., Town C.D.;
RT "Reconstruction of cDNA sequences for hypothetical genes in Arabidopsis
RT thaliana from 5' and 3' RACE products.";
RL Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 38-225.
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 60-225.
RA Pan Y., Gong W., Liu D., Fu Q., Mei W.-Q., Song W.-Q., Ma L.-G., Luo J.-C.,
RA Deng X.-W., Zhu Y.-X.;
RT "Molecular cloning, expression, phylogenetic and functional
RT characterization of the Arabidopsis AP2/EREBP transcription factor
RT family.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] OF 60-225.
RC STRAIN=cv. Columbia;
RA Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W.,
RA Redman J.C., Wu H.C., Utterback T., Town C.D.;
RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases.
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16407444; DOI=10.1104/pp.105.073783;
RA Nakano T., Suzuki K., Fujimura T., Shinshi H.;
RT "Genome-wide analysis of the ERF gene family in Arabidopsis and rice.";
RL Plant Physiol. 140:411-432(2006).
CC -!- FUNCTION: Probably acts as a transcriptional activator. Binds to the
CC GCC-box pathogenesis-related promoter element. May be involved in the
CC regulation of gene expression by stress factors and by components of
CC stress signal transduction pathways (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, stems, seeds and stamen.
CC {ECO:0000269|PubMed:16307362}.
CC -!- INDUCTION: By drought. {ECO:0000269|PubMed:16307362}.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. ERF
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC42248.2; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=AAK44156.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=AAT68354.1; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305};
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DR EMBL; AY974198; AAX89124.1; -; mRNA.
DR EMBL; AC005395; AAC42248.2; ALT_INIT; Genomic_DNA.
DR EMBL; CP002685; AEC07756.1; -; Genomic_DNA.
DR EMBL; AY600555; AAT68354.1; ALT_SEQ; mRNA.
DR EMBL; AF370341; AAK44156.1; ALT_INIT; mRNA.
DR EMBL; AY063000; AAL34174.1; -; mRNA.
DR EMBL; AY560870; AAT44937.1; -; mRNA.
DR EMBL; AY924749; AAX23824.1; -; Genomic_DNA.
DR PIR; B84653; B84653.
DR RefSeq; NP_565609.3; NM_128142.4.
DR AlphaFoldDB; Q52QU1; -.
DR SMR; Q52QU1; -.
DR BioGRID; 2476; 3.
DR IntAct; Q52QU1; 3.
DR STRING; 3702.AT2G25820.1; -.
DR PaxDb; Q52QU1; -.
DR PRIDE; Q52QU1; -.
DR EnsemblPlants; AT2G25820.1; AT2G25820.1; AT2G25820.
DR GeneID; 817124; -.
DR Gramene; AT2G25820.1; AT2G25820.1; AT2G25820.
DR KEGG; ath:AT2G25820; -.
DR Araport; AT2G25820; -.
DR TAIR; locus:2043495; AT2G25820.
DR eggNOG; ENOG502QW5S; Eukaryota.
DR HOGENOM; CLU_063331_3_2_1; -.
DR InParanoid; Q52QU1; -.
DR OMA; CADYPSP; -.
DR OrthoDB; 1341536at2759; -.
DR PhylomeDB; Q52QU1; -.
DR PRO; PR:Q52QU1; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q52QU1; baseline and differential.
DR Genevisible; Q52QU1; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW.
DR CDD; cd00018; AP2; 1.
DR Gene3D; 3.30.730.10; -; 1.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR Pfam; PF00847; AP2; 1.
DR PRINTS; PR00367; ETHRSPELEMNT.
DR SMART; SM00380; AP2; 1.
DR SUPFAM; SSF54171; SSF54171; 1.
DR PROSITE; PS51032; AP2_ERF; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Ethylene signaling pathway; Nucleus;
KW Phosphoprotein; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..225
FT /note="Ethylene-responsive transcription factor ERF042"
FT /id="PRO_0000297925"
FT DNA_BIND 25..82
FT /note="AP2/ERF"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 134..157
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 136..157
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 95
FT /note="Phosphoserine"
FT /evidence="ECO:0000250|UniProtKB:P42736"
FT CONFLICT 157
FT /note="S -> P (in Ref. 4; AAT44937)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 225 AA; 24865 MW; B22AE7FDF971AD4F CRC64;
MVDSHGSDTE CSSKKKKEKT KEKGVYRGAR MRSWGKWVSE IREPRKKSRI WLGTFPTAEM
AARAHDVAAL SIKGSSAILN FPELADFLPR PVSLSQQDIQ AAAAEAALMD FKTVPFHLQD
DSTPLQTRCD TEKIEKWSSS SSSASSSSSS SSSSSSSMLS GELGDIVELP SLENNVKYDC
ALYDSLEGLV SMPPWLDATE NDFRYGDDSV LLDPCLKESF LWNYE
