EXB11_ORYSJ
ID EXB11_ORYSJ Reviewed; 292 AA.
AC Q6H676; Q0DYY6; Q941I8; Q946J6;
DT 03-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 19-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=Expansin-B11;
DE AltName: Full=Beta-expansin-11;
DE AltName: Full=OsEXPB11;
DE AltName: Full=OsaEXPb1.20;
DE Flags: Precursor;
GN Name=EXPB11; OrderedLocusNames=Os02g0658800, LOC_Os02g44108;
GN ORFNames=OJ1112_F09.30, P0708H12.9;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], TISSUE SPECIFICITY, AND
RP INDUCTION.
RX PubMed=11598238; DOI=10.1104/pp.010345;
RA Lee Y., Kende H.;
RT "Expression of beta-expansins is correlated with internodal elongation in
RT deepwater rice.";
RL Plant Physiol. 127:645-654(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP DEVELOPMENTAL STAGE.
RX PubMed=12428004; DOI=10.1104/pp.008888;
RA Lee Y., Kende H.;
RT "Expression of alpha-expansin and expansin-like genes in deepwater rice.";
RL Plant Physiol. 130:1396-1405(2002).
RN [7]
RP NOMENCLATURE.
RX PubMed=15604683; DOI=10.1007/s11103-004-0158-6;
RA Kende H., Bradford K.J., Brummell D.A., Cho H.-T., Cosgrove D.J.,
RA Fleming A.J., Gehring C., Lee Y., McQueen-Mason S.J., Rose J.K.C.,
RA Voesenek L.A.C.;
RT "Nomenclature for members of the expansin superfamily of genes and
RT proteins.";
RL Plant Mol. Biol. 55:311-314(2004).
CC -!- FUNCTION: May cause loosening and extension of plant cell walls by
CC disrupting non-covalent bonding between cellulose microfibrils and
CC matrix glucans. No enzymatic activity has been found. May be required
CC for rapid internodal elongation in deepwater rice during submergence
CC (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000250}. Membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in internodes.
CC {ECO:0000269|PubMed:11598238}.
CC -!- DEVELOPMENTAL STAGE: Expressed in the growing regions of roots,
CC coleoptiles, and internodes. {ECO:0000269|PubMed:12428004}.
CC -!- INDUCTION: By gibberellin (GA3) and wounding.
CC {ECO:0000269|PubMed:11598238}.
CC -!- SIMILARITY: Belongs to the expansin family. Expansin B subfamily.
CC {ECO:0000305}.
CC -!- WEB RESOURCE: Name=EXPANSIN homepage;
CC URL="http://homes.bio.psu.edu/expansins/";
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DR EMBL; AF391103; AAL24473.1; -; Genomic_DNA.
DR EMBL; AY046927; AAL04420.1; -; mRNA.
DR EMBL; AP005072; BAD25736.1; -; Genomic_DNA.
DR EMBL; AP005289; BAD25773.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09552.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS80126.1; -; Genomic_DNA.
DR EMBL; AK059638; BAG87061.1; -; mRNA.
DR RefSeq; XP_015623786.1; XM_015768300.1.
DR AlphaFoldDB; Q6H676; -.
DR SMR; Q6H676; -.
DR STRING; 4530.OS02T0658800-01; -.
DR PaxDb; Q6H676; -.
DR PRIDE; Q6H676; -.
DR EnsemblPlants; Os02t0658800-01; Os02t0658800-01; Os02g0658800.
DR GeneID; 4330213; -.
DR Gramene; Os02t0658800-01; Os02t0658800-01; Os02g0658800.
DR KEGG; osa:4330213; -.
DR eggNOG; ENOG502S9SU; Eukaryota.
DR HOGENOM; CLU_027462_1_2_1; -.
DR InParanoid; Q6H676; -.
DR OMA; HSTITGP; -.
DR OrthoDB; 754048at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6H676; OS.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009653; P:anatomical structure morphogenesis; IEA:UniProt.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0019953; P:sexual reproduction; IEA:InterPro.
DR Gene3D; 2.40.40.10; -; 1.
DR Gene3D; 2.60.40.760; -; 1.
DR InterPro; IPR007118; Expan_Lol_pI.
DR InterPro; IPR007112; Expansin/allergen_DPBB_dom.
DR InterPro; IPR007117; Expansin_CBD.
DR InterPro; IPR036749; Expansin_CBD_sf.
DR InterPro; IPR005795; LolPI.
DR InterPro; IPR009009; RlpA-like_DPBB.
DR InterPro; IPR036908; RlpA-like_sf.
DR Pfam; PF03330; DPBB_1; 1.
DR Pfam; PF01357; Expansin_C; 1.
DR PRINTS; PR01225; EXPANSNFAMLY.
DR PRINTS; PR00829; LOLP1ALLERGN.
DR SMART; SM00837; DPBB_1; 1.
DR SUPFAM; SSF49590; SSF49590; 1.
DR SUPFAM; SSF50685; SSF50685; 1.
DR PROSITE; PS50843; EXPANSIN_CBD; 1.
DR PROSITE; PS50842; EXPANSIN_EG45; 1.
PE 2: Evidence at transcript level;
KW Cell wall; Cell wall biogenesis/degradation; Disulfide bond; Glycoprotein;
KW Membrane; Reference proteome; Secreted; Signal.
FT SIGNAL 1..27
FT /evidence="ECO:0000255"
FT CHAIN 28..292
FT /note="Expansin-B11"
FT /id="PRO_0000252022"
FT DOMAIN 82..192
FT /note="Expansin-like EG45"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DOMAIN 205..287
FT /note="Expansin-like CBD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00078"
FT CARBOHYD 51
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT DISULFID 85..114
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 117..187
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 122..128
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
SQ SEQUENCE 292 AA; 30500 MW; 9CC4FFF7A1AF49CE CRC64;
MAKSCTLVLL LVALVGLSLL VSPIACSRKL SKPKPKPKPS MKKPVVRAHN NYTGSPSVTV
TTGWAAAGAT YYGAPNGDGS DGGACGYQTA VGQRPFSSMI AAGSPSLYKG GKGCGACYEV
KCTTNAACSG QPATVVITDE CPGGICLAGA AHFDMSGTSM GAMAKPGMAD KLRAAGILQV
QYRRVPCKYS GVNIAFRVDQ GANPFYFEVL IEFEDGDGDL NAVDLMEAGC GWTPMVQNWG
ALWRYNSNTG KALKAPFSLR LTSDSGKVLV ANNVIPASWK PGVTYRSLVN YS
