EXP16_ORYSJ
ID EXP16_ORYSJ Reviewed; 260 AA.
AC Q69XV9; Q0DAW4; Q946I5;
DT 03-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Expansin-A16;
DE AltName: Full=Alpha-expansin-16;
DE AltName: Full=OsEXP16;
DE AltName: Full=OsEXPA16;
DE AltName: Full=OsaEXPa1.27;
DE Flags: Precursor;
GN Name=EXPA16; Synonyms=EXP16;
GN OrderedLocusNames=Os06g0621900, LOC_Os06g41700; ORFNames=P0040H10.29;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 52-260, AND DEVELOPMENTAL STAGE.
RX PubMed=12428004; DOI=10.1104/pp.008888;
RA Lee Y., Kende H.;
RT "Expression of alpha-expansin and expansin-like genes in deepwater rice.";
RL Plant Physiol. 130:1396-1405(2002).
RN [6]
RP NOMENCLATURE.
RX PubMed=15604683; DOI=10.1007/s11103-004-0158-6;
RA Kende H., Bradford K.J., Brummell D.A., Cho H.-T., Cosgrove D.J.,
RA Fleming A.J., Gehring C., Lee Y., McQueen-Mason S.J., Rose J.K.C.,
RA Voesenek L.A.C.;
RT "Nomenclature for members of the expansin superfamily of genes and
RT proteins.";
RL Plant Mol. Biol. 55:311-314(2004).
RN [7]
RP TISSUE SPECIFICITY.
RX PubMed=16267395;
RA Shin J.-H., Jeong D.-H., Park M.C., An G.;
RT "Characterization and transcriptional expression of the alpha-expansin gene
RT family in rice.";
RL Mol. Cells 20:210-218(2005).
CC -!- FUNCTION: May cause loosening and extension of plant cell walls by
CC disrupting non-covalent bonding between cellulose microfibrils and
CC matrix glucans. No enzymatic activity has been found. May be required
CC for rapid internodal elongation in deepwater rice during submergence
CC (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000250}. Membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in panicles and flowers.
CC {ECO:0000269|PubMed:16267395}.
CC -!- DEVELOPMENTAL STAGE: Expressed in the growing regions of roots,
CC internodes and leaves. {ECO:0000269|PubMed:12428004}.
CC -!- INDUCTION: By gibberellin (GA3) and wounding.
CC -!- SIMILARITY: Belongs to the expansin family. Expansin A subfamily.
CC {ECO:0000305}.
CC -!- WEB RESOURCE: Name=EXPANSIN homepage;
CC URL="http://homes.bio.psu.edu/expansins/";
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DR EMBL; AP003539; BAD35368.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF20009.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS98665.1; -; Genomic_DNA.
DR EMBL; AK101940; BAG95304.1; -; mRNA.
DR EMBL; AF394552; AAL24488.1; -; Genomic_DNA.
DR RefSeq; XP_015641048.1; XM_015785562.1.
DR AlphaFoldDB; Q69XV9; -.
DR SMR; Q69XV9; -.
DR STRING; 4530.OS06T0621900-01; -.
DR PaxDb; Q69XV9; -.
DR PRIDE; Q69XV9; -.
DR EnsemblPlants; Os06t0621900-01; Os06t0621900-01; Os06g0621900.
DR GeneID; 4341549; -.
DR Gramene; Os06t0621900-01; Os06t0621900-01; Os06g0621900.
DR KEGG; osa:4341549; -.
DR eggNOG; ENOG502QV32; Eukaryota.
DR HOGENOM; CLU_027462_0_1_1; -.
DR InParanoid; Q69XV9; -.
DR OMA; HRATYGK; -.
DR OrthoDB; 856613at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q69XV9; OS.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009664; P:plant-type cell wall organization; IEA:InterPro.
DR GO; GO:0006949; P:syncytium formation; IEA:EnsemblPlants.
DR Gene3D; 2.40.40.10; -; 1.
DR Gene3D; 2.60.40.760; -; 1.
DR InterPro; IPR007118; Expan_Lol_pI.
DR InterPro; IPR002963; Expansin.
DR InterPro; IPR007112; Expansin/allergen_DPBB_dom.
DR InterPro; IPR007117; Expansin_CBD.
DR InterPro; IPR036749; Expansin_CBD_sf.
DR InterPro; IPR009009; RlpA-like_DPBB.
DR InterPro; IPR036908; RlpA-like_sf.
DR PANTHER; PTHR31867; PTHR31867; 1.
DR Pfam; PF03330; DPBB_1; 1.
DR Pfam; PF01357; Expansin_C; 1.
DR PRINTS; PR01226; EXPANSIN.
DR PRINTS; PR01225; EXPANSNFAMLY.
DR SMART; SM00837; DPBB_1; 1.
DR SUPFAM; SSF49590; SSF49590; 1.
DR SUPFAM; SSF50685; SSF50685; 1.
DR PROSITE; PS50843; EXPANSIN_CBD; 1.
DR PROSITE; PS50842; EXPANSIN_EG45; 1.
PE 2: Evidence at transcript level;
KW Cell wall; Cell wall biogenesis/degradation; Membrane; Reference proteome;
KW Secreted; Signal.
FT SIGNAL 1..19
FT /evidence="ECO:0000255"
FT CHAIN 20..260
FT /note="Expansin-A16"
FT /id="PRO_0000251995"
FT DOMAIN 52..166
FT /note="Expansin-like EG45"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DOMAIN 176..255
FT /note="Expansin-like CBD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00078"
FT CONFLICT 160
FT /note="S -> N (in Ref. 5; AAL24488)"
FT /evidence="ECO:0000305"
FT CONFLICT 164
FT /note="A -> P (in Ref. 5; AAL24488)"
FT /evidence="ECO:0000305"
FT CONFLICT 168
FT /note="R -> S (in Ref. 5; AAL24488)"
FT /evidence="ECO:0000305"
FT CONFLICT 172
FT /note="T -> P (in Ref. 5; AAL24488)"
FT /evidence="ECO:0000305"
FT CONFLICT 175
FT /note="A -> P (in Ref. 5; AAL24488)"
FT /evidence="ECO:0000305"
FT CONFLICT 179..190
FT /note="QVLITNVAADGE -> KVVIKKRGGERK (in Ref. 5; AAL24488)"
FT /evidence="ECO:0000305"
FT CONFLICT 194
FT /note="V -> G (in Ref. 5; AAL24488)"
FT /evidence="ECO:0000305"
FT CONFLICT 198..218
FT /note="GSRTGWIPMGRNWGQNWQCDA -> SLKPRVTPKEKEGGPELTVRR (in
FT Ref. 5; AAL24488)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 260 AA; 27998 MW; B793143CB9E43000 CRC64;
MSSVLLFLLL LLLSGVSLSG CIRLGNGGYE EWRMGSATYI KESLGHPLND GGGACGYGDL
DIFRYGRYTA GVSGALFGRG SACGGCYEVR CVNHVLWCLR GSPTVVVTAT DFCAPNLGLS
DDYGGWCNFP KEHFEMSEAA FLRVAKAKAD IVPVQFRRVS CDRAGGMRFT ITGGASFLQV
LITNVAADGE VAAVKVKGSR TGWIPMGRNW GQNWQCDADL RGQPLSFEVT GGRGRTVVAY
SVAPPDWMFA QTFEGKQFVE
