EXP24_ORYSJ
ID EXP24_ORYSJ Reviewed; 278 AA.
AC Q4PR42; A3A5D3; Q6ERU5; Q946H8;
DT 03-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 2.
DT 03-AUG-2022, entry version 83.
DE RecName: Full=Expansin-A24;
DE AltName: Full=Alpha-expansin-24;
DE AltName: Full=OsEXP24;
DE AltName: Full=OsEXPA24;
DE AltName: Full=OsaEXPa1.10;
DE Flags: Precursor;
GN Name=EXPA24; Synonyms=EXP24;
GN OrderedLocusNames=Os02g0267900, LOC_Os02g16800;
GN ORFNames=OsJ_06187 {ECO:0000312|EMBL:EAZ22522.1}, P0693E08.12;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=12428004; DOI=10.1104/pp.008888;
RA Lee Y., Kende H.;
RT "Expression of alpha-expansin and expansin-like genes in deepwater rice.";
RL Plant Physiol. 130:1396-1405(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
RC STRAIN=cv. Dongjin;
RX PubMed=16267395;
RA Shin J.-H., Jeong D.-H., Park M.C., An G.;
RT "Characterization and transcriptional expression of the alpha-expansin gene
RT family in rice.";
RL Mol. Cells 20:210-218(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NOMENCLATURE.
RX PubMed=15604683; DOI=10.1007/s11103-004-0158-6;
RA Kende H., Bradford K.J., Brummell D.A., Cho H.-T., Cosgrove D.J.,
RA Fleming A.J., Gehring C., Lee Y., McQueen-Mason S.J., Rose J.K.C.,
RA Voesenek L.A.C.;
RT "Nomenclature for members of the expansin superfamily of genes and
RT proteins.";
RL Plant Mol. Biol. 55:311-314(2004).
CC -!- FUNCTION: May cause loosening and extension of plant cell walls by
CC disrupting non-covalent bonding between cellulose microfibrils and
CC matrix glucans. No enzymatic activity has been found. May be required
CC for rapid internodal elongation in deepwater rice during submergence
CC (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000250}. Membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:16267395}.
CC -!- SIMILARITY: Belongs to the expansin family. Expansin A subfamily.
CC {ECO:0000305}.
CC -!- WEB RESOURCE: Name=EXPANSIN homepage;
CC URL="http://homes.bio.psu.edu/expansins/";
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DR EMBL; AF394559; AAL24495.1; -; Genomic_DNA.
DR EMBL; DQ061065; AAY63556.1; -; mRNA.
DR EMBL; AP005428; BAD28625.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS78032.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ22522.1; -; Genomic_DNA.
DR RefSeq; XP_015624731.1; XM_015769245.1.
DR AlphaFoldDB; Q4PR42; -.
DR SMR; Q4PR42; -.
DR STRING; 4530.OS02T0267900-00; -.
DR PaxDb; Q4PR42; -.
DR PRIDE; Q4PR42; -.
DR EnsemblPlants; Os02t0267900-00; Os02t0267900-00; Os02g0267900.
DR GeneID; 107276428; -.
DR Gramene; Os02t0267900-00; Os02t0267900-00; Os02g0267900.
DR KEGG; osa:107276428; -.
DR eggNOG; ENOG502SWQD; Eukaryota.
DR HOGENOM; CLU_027462_0_1_1; -.
DR InParanoid; Q4PR42; -.
DR OMA; EWTPMAR; -.
DR OrthoDB; 976855at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q4PR42; OS.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009653; P:anatomical structure morphogenesis; IEA:UniProt.
DR GO; GO:0009664; P:plant-type cell wall organization; IEA:InterPro.
DR Gene3D; 2.40.40.10; -; 1.
DR Gene3D; 2.60.40.760; -; 1.
DR InterPro; IPR007118; Expan_Lol_pI.
DR InterPro; IPR002963; Expansin.
DR InterPro; IPR007112; Expansin/allergen_DPBB_dom.
DR InterPro; IPR007117; Expansin_CBD.
DR InterPro; IPR036749; Expansin_CBD_sf.
DR InterPro; IPR009009; RlpA-like_DPBB.
DR InterPro; IPR036908; RlpA-like_sf.
DR PANTHER; PTHR31867; PTHR31867; 1.
DR Pfam; PF03330; DPBB_1; 1.
DR Pfam; PF01357; Expansin_C; 1.
DR PRINTS; PR01226; EXPANSIN.
DR PRINTS; PR01225; EXPANSNFAMLY.
DR SMART; SM00837; DPBB_1; 1.
DR SUPFAM; SSF49590; SSF49590; 1.
DR SUPFAM; SSF50685; SSF50685; 1.
DR PROSITE; PS50843; EXPANSIN_CBD; 1.
DR PROSITE; PS50842; EXPANSIN_EG45; 1.
PE 2: Evidence at transcript level;
KW Cell wall; Cell wall biogenesis/degradation; Glycoprotein; Membrane;
KW Reference proteome; Secreted; Signal.
FT SIGNAL 1..27
FT /evidence="ECO:0000255"
FT CHAIN 28..278
FT /note="Expansin-A24"
FT /id="PRO_0000252003"
FT DOMAIN 68..183
FT /note="Expansin-like EG45"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DOMAIN 193..273
FT /note="Expansin-like CBD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00078"
FT CARBOHYD 217
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CONFLICT 119
FT /note="G -> E (in Ref. 1; AAL24495 and 2; AAY63556)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 278 AA; 29974 MW; C9326EAA691430C4 CRC64;
MADMAPARAL ALVLLAVAVG SALMAAAQDA PSPPTPMAPS PSTDETPPVW LKAHATFYGG
ADASGTMGGA CGYVDLYSQG YGTRNAALST ALFNDGASCG QCYKIACDRK RAPQWCKPGV
TVTVTATNFC PPNWNLPSDN GGWCNPPRPH FDMAQPAWEK IGIYRAGIIP VMYQRVPCVK
KGGVRFTING HDYFNLVLVT NVATTGSIKS MDIMGSNSTD WMPMVRNWGA NWHSLSYLTG
QMLSFRVTNM DGQTLVFRNI VPSGWKFGQT FASKLQFK
