EXPA1_ORYSJ
ID EXPA1_ORYSJ Reviewed; 261 AA.
AC Q7XWU8; A3AQ20; O24208;
DT 03-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2004, sequence version 2.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Expansin-A1;
DE AltName: Full=Alpha-expansin-1;
DE AltName: Full=OsEXP1;
DE AltName: Full=OsEXPA1;
DE AltName: Full=OsaEXPa1.16;
DE AltName: Full=RiExA;
DE Flags: Precursor;
GN Name=EXPA1; Synonyms=EXP1; OrderedLocusNames=Os04g0228400, LOC_Os04g15840;
GN ORFNames=OsJ_13482 {ECO:0000312|EMBL:EAZ29409.1}, OSJNBa0065B15.2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, AND
RP INDUCTION.
RC STRAIN=cv. Nipponbare; TISSUE=Shoot;
RX PubMed=9338967; DOI=10.2307/3870451;
RA Cho H.-T., Kende H.;
RT "Expression of expansin genes is correlated with growth in deepwater
RT rice.";
RL Plant Cell 9:1661-1671(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], DEVELOPMENTAL STAGE, AND INDUCTION.
RX PubMed=12428004; DOI=10.1104/pp.008888;
RA Lee Y., Kende H.;
RT "Expression of alpha-expansin and expansin-like genes in deepwater rice.";
RL Plant Physiol. 130:1396-1405(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [8]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [9]
RP TISSUE SPECIFICITY.
RX PubMed=9807819; DOI=10.1046/j.1365-313x.1998.00258.x;
RA Cho H.-T., Kende H.;
RT "Tissue localization of expansins in deepwater rice.";
RL Plant J. 15:805-812(1998).
RN [10]
RP DEVELOPMENTAL STAGE.
RX PubMed=11030545; DOI=10.1007/s004250000311;
RA Huang J., Takano T., Akita S.;
RT "Expression of alpha-expansin genes in young seedlings of rice (Oryza
RT sativa L.).";
RL Planta 211:467-473(2000).
RN [11]
RP NOMENCLATURE.
RX PubMed=15604683; DOI=10.1007/s11103-004-0158-6;
RA Kende H., Bradford K.J., Brummell D.A., Cho H.-T., Cosgrove D.J.,
RA Fleming A.J., Gehring C., Lee Y., McQueen-Mason S.J., Rose J.K.C.,
RA Voesenek L.A.C.;
RT "Nomenclature for members of the expansin superfamily of genes and
RT proteins.";
RL Plant Mol. Biol. 55:311-314(2004).
RN [12]
RP TISSUE SPECIFICITY.
RX PubMed=16267395;
RA Shin J.-H., Jeong D.-H., Park M.C., An G.;
RT "Characterization and transcriptional expression of the alpha-expansin gene
RT family in rice.";
RL Mol. Cells 20:210-218(2005).
CC -!- FUNCTION: May cause loosening and extension of plant cell walls by
CC disrupting non-covalent bonding between cellulose microfibrils and
CC matrix glucans. No enzymatic activity has been found. May be required
CC for rapid internodal elongation in deepwater rice during submergence
CC (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000250}. Membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in adventitious root primordia,
CC coleoptiles, shoot apex, leaf primordia, panicles and flowers.
CC {ECO:0000269|PubMed:16267395, ECO:0000269|PubMed:9338967,
CC ECO:0000269|PubMed:9807819}.
CC -!- DEVELOPMENTAL STAGE: Expressed in the apical region (growing zone) of
CC the root hair. Expressed in the basal growing zone of air-grown
CC internode. Expressed in the growing region of leaves. Expressed in the
CC developing seeds. {ECO:0000269|PubMed:11030545,
CC ECO:0000269|PubMed:12428004, ECO:0000269|PubMed:9338967}.
CC -!- INDUCTION: By gibberellin (GA3) and wounding.
CC {ECO:0000269|PubMed:12428004, ECO:0000269|PubMed:9338967}.
CC -!- SIMILARITY: Belongs to the expansin family. Expansin A subfamily.
CC {ECO:0000305}.
CC -!- WEB RESOURCE: Name=EXPANSIN homepage;
CC URL="http://homes.bio.psu.edu/expansins/";
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DR EMBL; Y07782; CAA69105.1; -; mRNA.
DR EMBL; AF394543; AAL24479.1; -; Genomic_DNA.
DR EMBL; AL731598; CAD39898.2; -; Genomic_DNA.
DR EMBL; AP008210; BAF14203.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS88220.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ29409.1; -; Genomic_DNA.
DR EMBL; AK069548; BAG91484.1; -; mRNA.
DR PIR; T03737; T03737.
DR RefSeq; XP_015634193.1; XM_015778707.1.
DR AlphaFoldDB; Q7XWU8; -.
DR SMR; Q7XWU8; -.
DR STRING; 4530.OS04T0228400-01; -.
DR PaxDb; Q7XWU8; -.
DR PRIDE; Q7XWU8; -.
DR EnsemblPlants; Os04t0228400-01; Os04t0228400-01; Os04g0228400.
DR GeneID; 4335222; -.
DR Gramene; Os04t0228400-01; Os04t0228400-01; Os04g0228400.
DR KEGG; osa:4335222; -.
DR eggNOG; ENOG502QVVV; Eukaryota.
DR HOGENOM; CLU_027462_0_1_1; -.
DR InParanoid; Q7XWU8; -.
DR OMA; WKEAACF; -.
DR OrthoDB; 976855at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 4.
DR Genevisible; Q7XWU8; OS.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009653; P:anatomical structure morphogenesis; IEA:UniProt.
DR GO; GO:0009664; P:plant-type cell wall organization; IEA:InterPro.
DR Gene3D; 2.40.40.10; -; 1.
DR Gene3D; 2.60.40.760; -; 1.
DR InterPro; IPR007118; Expan_Lol_pI.
DR InterPro; IPR002963; Expansin.
DR InterPro; IPR007112; Expansin/allergen_DPBB_dom.
DR InterPro; IPR007117; Expansin_CBD.
DR InterPro; IPR036749; Expansin_CBD_sf.
DR InterPro; IPR009009; RlpA-like_DPBB.
DR InterPro; IPR036908; RlpA-like_sf.
DR PANTHER; PTHR31867; PTHR31867; 1.
DR Pfam; PF03330; DPBB_1; 1.
DR Pfam; PF01357; Expansin_C; 1.
DR PRINTS; PR01226; EXPANSIN.
DR PRINTS; PR01225; EXPANSNFAMLY.
DR SMART; SM00837; DPBB_1; 1.
DR SUPFAM; SSF49590; SSF49590; 1.
DR SUPFAM; SSF50685; SSF50685; 1.
DR PROSITE; PS50843; EXPANSIN_CBD; 1.
DR PROSITE; PS50842; EXPANSIN_EG45; 1.
PE 2: Evidence at transcript level;
KW Cell wall; Cell wall biogenesis/degradation; Disulfide bond; Membrane;
KW Reference proteome; Secreted; Signal.
FT SIGNAL 1..28
FT /evidence="ECO:0000255"
FT CHAIN 29..261
FT /note="Expansin-A1"
FT /id="PRO_0000251980"
FT DOMAIN 52..167
FT /note="Expansin-like EG45"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DOMAIN 177..256
FT /note="Expansin-like CBD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00078"
FT DISULFID 55..83
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 86..162
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 91..100
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
SQ SEQUENCE 261 AA; 27748 MW; 941705D5617B6FF8 CRC64;
MAGSSAATSC ARFLALLATC LLWNEAASFT ASGWNKAFAT FYGGSDASGT MGGACGYGDL
YSTGYGTNTA ALSTVLFNDG ASCGQCYRIM CDYQADRRFC ISGTSVTITA TNLCPPNYAL
PNDAGGWCNP PRQHFDMAEP AWLKIGVYVG GIVPVMYQRV PCAKQGGVRF TINGRDYFEL
VLVSNVGGVG SIQSVSIKGS RTGWMAMSRN WGVNWQSNAY LDGQSLSFKV TSSDGQTLTF
LDVAPAGWTF GQTFSTSQQF S
