EXPA3_ORYSJ
ID EXPA3_ORYSJ Reviewed; 255 AA.
AC Q40637; Q0DJI2;
DT 03-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 2.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Expansin-A3;
DE AltName: Full=Alpha-expansin-3;
DE AltName: Full=OsEXP3;
DE AltName: Full=OsEXPA3;
DE AltName: Full=OsaEXPa1.18;
DE AltName: Full=RiExD;
DE Flags: Precursor;
GN Name=EXPA3; Synonyms=EXP3; OrderedLocusNames=Os05g0276500, LOC_Os05g19570;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=7568110; DOI=10.1073/pnas.92.20.9245;
RA Shcherban T.Y., Shi J., Durachko D.M., Guiltinan M.J., McQueen-Mason S.J.,
RA Shieh M., Cosgrove D.J.;
RT "Molecular cloning and sequence analysis of expansins - a highly conserved,
RT multigene family of proteins that mediate cell wall extension in plants.";
RL Proc. Natl. Acad. Sci. U.S.A. 92:9245-9249(1995).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
RC STRAIN=cv. Nipponbare; TISSUE=Shoot;
RX PubMed=9338967; DOI=10.2307/3870451;
RA Cho H.-T., Kende H.;
RT "Expression of expansin genes is correlated with growth in deepwater
RT rice.";
RL Plant Cell 9:1661-1671(1997).
RN [8]
RP TISSUE SPECIFICITY.
RX PubMed=9807819; DOI=10.1046/j.1365-313x.1998.00258.x;
RA Cho H.-T., Kende H.;
RT "Tissue localization of expansins in deepwater rice.";
RL Plant J. 15:805-812(1998).
RN [9]
RP NOMENCLATURE.
RX PubMed=15604683; DOI=10.1007/s11103-004-0158-6;
RA Kende H., Bradford K.J., Brummell D.A., Cho H.-T., Cosgrove D.J.,
RA Fleming A.J., Gehring C., Lee Y., McQueen-Mason S.J., Rose J.K.C.,
RA Voesenek L.A.C.;
RT "Nomenclature for members of the expansin superfamily of genes and
RT proteins.";
RL Plant Mol. Biol. 55:311-314(2004).
CC -!- FUNCTION: May cause loosening and extension of plant cell walls by
CC disrupting non-covalent bonding between cellulose microfibrils and
CC matrix glucans. No enzymatic activity has been found. May be required
CC for rapid internodal elongation in deepwater rice during submergence
CC (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000250}. Membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in the epidermis and vascular cylinder of
CC the root tip, lateral root primordia, adventitious root primordia,
CC shoot apex and leaf primordia. {ECO:0000269|PubMed:9338967,
CC ECO:0000269|PubMed:9807819}.
CC -!- DEVELOPMENTAL STAGE: Expressed in the apical region (growing zone) of
CC the root hair. {ECO:0000269|PubMed:9338967}.
CC -!- SIMILARITY: Belongs to the expansin family. Expansin A subfamily.
CC {ECO:0000305}.
CC -!- WEB RESOURCE: Name=EXPANSIN homepage;
CC URL="http://homes.bio.psu.edu/expansins/";
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DR EMBL; U30479; AAB38075.1; -; mRNA.
DR EMBL; AC130731; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP008211; BAF16991.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS93116.1; -; Genomic_DNA.
DR EMBL; AK060313; BAG87400.1; -; mRNA.
DR PIR; T03299; T03299.
DR RefSeq; XP_015638086.1; XM_015782600.1.
DR AlphaFoldDB; Q40637; -.
DR SMR; Q40637; -.
DR STRING; 4530.OS05T0276500-01; -.
DR PaxDb; Q40637; -.
DR PRIDE; Q40637; -.
DR EnsemblPlants; Os05t0276500-01; Os05t0276500-01; Os05g0276500.
DR GeneID; 4338278; -.
DR Gramene; Os05t0276500-01; Os05t0276500-01; Os05g0276500.
DR KEGG; osa:4338278; -.
DR eggNOG; ENOG502QS90; Eukaryota.
DR HOGENOM; CLU_027462_0_1_1; -.
DR InParanoid; Q40637; -.
DR OMA; FEMIAKY; -.
DR OrthoDB; 856613at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q40637; OS.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009653; P:anatomical structure morphogenesis; IEA:UniProt.
DR GO; GO:0009664; P:plant-type cell wall organization; IEA:InterPro.
DR Gene3D; 2.40.40.10; -; 1.
DR Gene3D; 2.60.40.760; -; 1.
DR InterPro; IPR007118; Expan_Lol_pI.
DR InterPro; IPR002963; Expansin.
DR InterPro; IPR007112; Expansin/allergen_DPBB_dom.
DR InterPro; IPR007117; Expansin_CBD.
DR InterPro; IPR036749; Expansin_CBD_sf.
DR InterPro; IPR009009; RlpA-like_DPBB.
DR InterPro; IPR036908; RlpA-like_sf.
DR PANTHER; PTHR31867; PTHR31867; 1.
DR Pfam; PF03330; DPBB_1; 1.
DR Pfam; PF01357; Expansin_C; 1.
DR PRINTS; PR01226; EXPANSIN.
DR PRINTS; PR01225; EXPANSNFAMLY.
DR SMART; SM00837; DPBB_1; 1.
DR SUPFAM; SSF49590; SSF49590; 1.
DR SUPFAM; SSF50685; SSF50685; 1.
DR PROSITE; PS50843; EXPANSIN_CBD; 1.
DR PROSITE; PS50842; EXPANSIN_EG45; 1.
PE 2: Evidence at transcript level;
KW Cell wall; Cell wall biogenesis/degradation; Disulfide bond; Membrane;
KW Reference proteome; Secreted; Signal.
FT SIGNAL 1..28
FT /evidence="ECO:0000255"
FT CHAIN 29..255
FT /note="Expansin-A3"
FT /id="PRO_0000251982"
FT DOMAIN 46..161
FT /note="Expansin-like EG45"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DOMAIN 171..250
FT /note="Expansin-like CBD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00078"
FT DISULFID 49..77
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 80..156
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 85..93
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT CONFLICT 43
FT /note="G -> C (in Ref. 1; AAB38075)"
FT /evidence="ECO:0000305"
FT CONFLICT 126
FT /note="R -> L (in Ref. 1; AAB38075)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 255 AA; 27305 MW; C5809DFDC93C8038 CRC64;
MLSGMEKQPA MLLVLVTLCA FACKRSVAQS AFATFYGGKD GSGTMGGACG YGNLYNAGYG
LYNAALSSAL FNDGAMCGAC YTITCDTSQT KWCKPGGNSI TITATNLCPP NWALPSNSGG
WCNPPRQHFD MSQPAWENIA VYQAGIVPVN YKRVPCQRSG GIRFAISGHD YFELVTVTNV
GGSGVVAQMS IKGSNTGWMA MSRNWGANWQ SNAYLAGQSL SFIVQLDDGR KVTAWNVAPS
NWFFGATYST SWVQF
