EXPA4_ORYSJ
ID EXPA4_ORYSJ Reviewed; 246 AA.
AC Q0DHB7; B7EQ33; P93442; Q75GN4; Q946J0;
DT 10-JUL-2007, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=Expansin-A4;
DE AltName: Full=Alpha-expansin-4;
DE AltName: Full=OsEXP4;
DE AltName: Full=OsEXPA4;
DE AltName: Full=OsaEXPa1.22;
DE Flags: Precursor;
GN Name=EXPA4; Synonyms=EXP4; OrderedLocusNames=Os05g0477600, LOC_Os05g39990;
GN ORFNames=OsJ_018161, OsJ_18926 {ECO:0000312|EMBL:EEE64095.1},
GN OSJNBa0018K15.5;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12428004; DOI=10.1104/pp.008888;
RA Lee Y., Kende H.;
RT "Expression of alpha-expansin and expansin-like genes in deepwater rice.";
RL Plant Physiol. 130:1396-1405(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=11030545; DOI=10.1007/s004250000311;
RA Huang J., Takano T., Akita S.;
RT "Expression of alpha-expansin genes in young seedlings of rice (Oryza
RT sativa L.).";
RL Planta 211:467-473(2000).
RN [9]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=12782731; DOI=10.1105/tpc.011965;
RA Choi D., Lee Y., Cho H.-T., Kende H.;
RT "Regulation of expansin gene expression affects growth and development in
RT transgenic rice plants.";
RL Plant Cell 15:1386-1398(2003).
RN [10]
RP NOMENCLATURE.
RX PubMed=15604683; DOI=10.1007/s11103-004-0158-6;
RA Kende H., Bradford K.J., Brummell D.A., Cho H.-T., Cosgrove D.J.,
RA Fleming A.J., Gehring C., Lee Y., McQueen-Mason S.J., Rose J.K.C.,
RA Voesenek L.A.C.;
RT "Nomenclature for members of the expansin superfamily of genes and
RT proteins.";
RL Plant Mol. Biol. 55:311-314(2004).
RN [11]
RP TISSUE SPECIFICITY.
RX PubMed=16267395;
RA Shin J.-H., Jeong D.-H., Park M.C., An G.;
RT "Characterization and transcriptional expression of the alpha-expansin gene
RT family in rice.";
RL Mol. Cells 20:210-218(2005).
CC -!- FUNCTION: Causes loosening and extension of plant cell walls by
CC disrupting non-covalent bonding between cellulose microfibrils and
CC matrix glucans. No enzymatic activity has been found. Required for
CC normal plant growth. May be required for rapid internodal elongation in
CC deepwater rice during submergence. {ECO:0000269|PubMed:12782731}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000250}. Membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in lateral root primordia, adventitious
CC root primordia, coleoptiles, shoot apex, leaf primordia, very young
CC leaves, panicles and flowers. {ECO:0000269|PubMed:11030545,
CC ECO:0000269|PubMed:16267395}.
CC -!- INDUCTION: By gibberellin (GA3), submergence and wounding.
CC {ECO:0000269|PubMed:11030545}.
CC -!- DISRUPTION PHENOTYPE: Plants are smaller.
CC {ECO:0000269|PubMed:12782731}.
CC -!- SIMILARITY: Belongs to the expansin family. Expansin A subfamily.
CC {ECO:0000305}.
CC -!- WEB RESOURCE: Name=EXPANSIN homepage;
CC URL="http://homes.bio.psu.edu/expansins/";
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DR EMBL; AF394545; AAL24481.1; -; Genomic_DNA.
DR EMBL; AC144737; AAT01362.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF17756.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS94546.1; -; Genomic_DNA.
DR EMBL; CM000142; EAZ34678.1; -; Genomic_DNA.
DR EMBL; CM000142; EEE64095.1; -; Genomic_DNA.
DR EMBL; AK100179; BAG94480.1; -; mRNA.
DR RefSeq; XP_015640854.1; XM_015785368.1.
DR AlphaFoldDB; Q0DHB7; -.
DR SMR; Q0DHB7; -.
DR STRING; 4530.OS05T0477600-01; -.
DR PaxDb; Q0DHB7; -.
DR PRIDE; Q0DHB7; -.
DR EnsemblPlants; Os05t0477600-01; Os05t0477600-01; Os05g0477600.
DR GeneID; 4339106; -.
DR Gramene; Os05t0477600-01; Os05t0477600-01; Os05g0477600.
DR KEGG; osa:4339106; -.
DR eggNOG; ENOG502QUZN; Eukaryota.
DR HOGENOM; CLU_027462_0_3_1; -.
DR InParanoid; Q0DHB7; -.
DR OMA; VWPREAF; -.
DR OrthoDB; 1114831at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000007752; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q0DHB7; OS.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009653; P:anatomical structure morphogenesis; IEA:UniProt.
DR GO; GO:0009664; P:plant-type cell wall organization; IEA:InterPro.
DR Gene3D; 2.40.40.10; -; 1.
DR Gene3D; 2.60.40.760; -; 1.
DR InterPro; IPR007118; Expan_Lol_pI.
DR InterPro; IPR002963; Expansin.
DR InterPro; IPR007112; Expansin/allergen_DPBB_dom.
DR InterPro; IPR007117; Expansin_CBD.
DR InterPro; IPR036749; Expansin_CBD_sf.
DR InterPro; IPR009009; RlpA-like_DPBB.
DR InterPro; IPR036908; RlpA-like_sf.
DR PANTHER; PTHR31867; PTHR31867; 1.
DR Pfam; PF03330; DPBB_1; 1.
DR Pfam; PF01357; Expansin_C; 1.
DR PRINTS; PR01226; EXPANSIN.
DR PRINTS; PR01225; EXPANSNFAMLY.
DR SMART; SM00837; DPBB_1; 1.
DR SUPFAM; SSF49590; SSF49590; 1.
DR SUPFAM; SSF50685; SSF50685; 1.
DR PROSITE; PS50843; EXPANSIN_CBD; 1.
DR PROSITE; PS50842; EXPANSIN_EG45; 1.
PE 2: Evidence at transcript level;
KW Cell wall; Disulfide bond; Membrane; Reference proteome; Secreted; Signal.
FT SIGNAL 1..18
FT /evidence="ECO:0000255"
FT CHAIN 19..246
FT /note="Expansin-A4"
FT /id="PRO_0000251983"
FT DOMAIN 42..154
FT /note="Expansin-like EG45"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DOMAIN 164..243
FT /note="Expansin-like CBD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00078"
FT DISULFID 45..73
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 76..149
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 81..88
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
SQ SEQUENCE 246 AA; 25884 MW; DFAA1224D8A3F9A0 CRC64;
MAIAGVLFLL FLARQASAAG YGGWQSAHAT FYGGGDASGT MGGACGYGNL YSQGYGTNTA
ALSTALFNDG AACGSCYELR CDNAGSSCLP GSITVTATNF CPPNYGLPSD DGGWCNPPRP
HFDMAEPAFL HIAQYRAGIV PVSFRRVPCV KKGGVRFTVN GHSYFNLVLV TNVAGAGDVR
SVSIKGSRTG WQPMSRNWGQ NWQSNAFLDG QSLSFQVTAS DGRTVTSNNV AHPGWQFGQT
FEGGQF
