EXPB1_ORYSJ
ID EXPB1_ORYSJ Reviewed; 267 AA.
AC Q40638; Q0DVY5; Q0DVY8; Q10SZ3; Q8GSC5; Q9LD01;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 30-MAY-2006, sequence version 2.
DT 03-AUG-2022, entry version 141.
DE RecName: Full=Expansin-B1;
DE AltName: Full=Beta-expansin-1;
DE AltName: Full=Major pollen allergen Ory s 1;
DE AltName: Full=Ory s I;
DE AltName: Full=OsEXPB1;
DE AltName: Full=OsaEXPb1.2;
DE AltName: Full=OsaEXPb1.3;
DE AltName: Allergen=Ory s 1;
DE Flags: Precursor;
GN Name=EXPB1a; OrderedLocusNames=Os03g0106500, LOC_Os03g01610;
GN ORFNames=OSJNBa0009C08.15;
GN and
GN Name=EXPB1b; OrderedLocusNames=Os03g0106900, LOC_Os03g01650;
GN ORFNames=OSJNBa0009C08.19;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND ALLERGEN.
RC TISSUE=Anther;
RX PubMed=7590339; DOI=10.1016/0378-1119(95)00527-d;
RA Xu H., Theerakulpisut P., Goulding N., Suphioglu C., Singh M.B.,
RA Bhalla P.L.;
RT "Cloning, expression and immunological characterization of Ory s 1, the
RT major allergen of rice pollen.";
RL Gene 164:255-259(1995).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=9177257; DOI=10.1073/pnas.94.12.6559;
RA Cosgrove D.J., Bedinger P.A., Durachko D.M.;
RT "Group I allergens of grass pollen as cell wall-loosening agents.";
RL Proc. Natl. Acad. Sci. U.S.A. 94:6559-6564(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=11598238; DOI=10.1104/pp.010345;
RA Lee Y., Kende H.;
RT "Expression of beta-expansins is correlated with internodal elongation in
RT deepwater rice.";
RL Plant Physiol. 127:645-654(2001).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [8]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [9]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [10]
RP NOMENCLATURE.
RX PubMed=15604683; DOI=10.1007/s11103-004-0158-6;
RA Kende H., Bradford K.J., Brummell D.A., Cho H.-T., Cosgrove D.J.,
RA Fleming A.J., Gehring C., Lee Y., McQueen-Mason S.J., Rose J.K.C.,
RA Voesenek L.A.C.;
RT "Nomenclature for members of the expansin superfamily of genes and
RT proteins.";
RL Plant Mol. Biol. 55:311-314(2004).
CC -!- FUNCTION: May cause loosening and extension of plant cell walls by
CC disrupting non-covalent bonding between cellulose microfibrils and
CC matrix glucans. No enzymatic activity has been found. May be required
CC for rapid internodal elongation in deepwater rice during submergence
CC (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000250}. Membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed in mature anthers but not in vegetative
CC or other floral tissues.
CC -!- ALLERGEN: Causes an allergic reaction in human. Causes grass pollen
CC allergy. Binds to IgE. {ECO:0000269|PubMed:7590339}.
CC -!- SIMILARITY: Belongs to the expansin family. Expansin B subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAA86533.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=AAA86533.1; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
CC -!- WEB RESOURCE: Name=EXPANSIN homepage;
CC URL="http://homes.bio.psu.edu/expansins/";
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DR EMBL; U31771; AAA86533.1; ALT_SEQ; mRNA.
DR EMBL; AF261270; AAF72983.1; -; mRNA.
DR EMBL; AY039023; AAK84682.1; -; Genomic_DNA.
DR EMBL; AC107224; AAN60487.1; -; Genomic_DNA.
DR EMBL; AC107224; AAN60491.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF93540.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF93536.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF10600.2; -; Genomic_DNA.
DR EMBL; AP008209; BAF10603.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS81873.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS81878.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ25286.1; -; Genomic_DNA.
DR EMBL; AK072792; BAG93147.1; -; mRNA.
DR PIR; T03303; T03303.
DR RefSeq; XP_015629185.1; XM_015773699.1.
DR RefSeq; XP_015629913.1; XM_015774427.1.
DR AlphaFoldDB; Q40638; -.
DR SMR; Q40638; -.
DR STRING; 4530.OS03T0106500-01; -.
DR Allergome; 3394; Ory s 1.0101.
DR Allergome; 499; Ory s 1.
DR PaxDb; Q40638; -.
DR PRIDE; Q40638; -.
DR EnsemblPlants; Os03t0106500-01; Os03t0106500-01; Os03g0106500.
DR EnsemblPlants; Os03t0106900-00; Os03t0106900-00; Os03g0106900.
DR GeneID; 4331323; -.
DR GeneID; 4331326; -.
DR Gramene; Os03t0106500-01; Os03t0106500-01; Os03g0106500.
DR Gramene; Os03t0106900-00; Os03t0106900-00; Os03g0106900.
DR KEGG; osa:4331323; -.
DR KEGG; osa:4331326; -.
DR eggNOG; ENOG502QRTE; Eukaryota.
DR HOGENOM; CLU_027462_1_1_1; -.
DR InParanoid; Q40638; -.
DR OMA; TQFRRVK; -.
DR OrthoDB; 754048at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q40638; baseline and differential.
DR Genevisible; Q40638; OS.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009653; P:anatomical structure morphogenesis; IEA:UniProt.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0019953; P:sexual reproduction; IEA:InterPro.
DR Gene3D; 2.40.40.10; -; 1.
DR Gene3D; 2.60.40.760; -; 1.
DR InterPro; IPR007118; Expan_Lol_pI.
DR InterPro; IPR007112; Expansin/allergen_DPBB_dom.
DR InterPro; IPR007117; Expansin_CBD.
DR InterPro; IPR036749; Expansin_CBD_sf.
DR InterPro; IPR005795; LolPI.
DR InterPro; IPR009009; RlpA-like_DPBB.
DR InterPro; IPR036908; RlpA-like_sf.
DR Pfam; PF03330; DPBB_1; 1.
DR Pfam; PF01357; Expansin_C; 1.
DR PRINTS; PR01225; EXPANSNFAMLY.
DR PRINTS; PR00829; LOLP1ALLERGN.
DR SMART; SM00837; DPBB_1; 1.
DR SUPFAM; SSF49590; SSF49590; 1.
DR SUPFAM; SSF50685; SSF50685; 1.
DR PROSITE; PS50843; EXPANSIN_CBD; 1.
DR PROSITE; PS50842; EXPANSIN_EG45; 1.
PE 1: Evidence at protein level;
KW Allergen; Cell wall; Cell wall biogenesis/degradation; Disulfide bond;
KW Glycoprotein; Membrane; Reference proteome; Secreted; Signal.
FT SIGNAL 1..22
FT /evidence="ECO:0000255"
FT CHAIN 23..267
FT /note="Expansin-B1"
FT /id="PRO_0000008721"
FT DOMAIN 61..167
FT /note="Expansin-like EG45"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DOMAIN 181..262
FT /note="Expansin-like CBD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00078"
FT CARBOHYD 32
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT DISULFID 64..92
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 95..162
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 100..106
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
SQ SEQUENCE 267 AA; 28627 MW; 3B89E1FE02D5A5DC CRC64;
MASSSLLLAC VVVAAMVSAV SCGPPKVPPG PNITTSYGDK WLEAKATWYG APKGAGPKDN
GGACGYKDVD KAPFLGMNSC GNDPIFKDGK GCGSCFEIKC SKPEACSDKP ALIHVTDMND
EPIAAYHFDL SGLAFGAMAK DGKDEELRKA GIIDTQFRRV KCKYPADTKI TFHIEKASNP
NYLALLVKYV AGDGDVVEVE IKEKGSEEWK ALKESWGAIW RIDTPKPLKG PFSVRVTTEG
GEKIIAEDAI PDGWKADSVY KSNVQAK
