EXPB5_ORYSJ
ID EXPB5_ORYSJ Reviewed; 275 AA.
AC Q7XT39; A0A0P0WD85; Q941N3; Q9LD09;
DT 03-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2004, sequence version 2.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Expansin-B5;
DE AltName: Full=Beta-expansin-5;
DE AltName: Full=OsEXPB5;
DE AltName: Full=OsaEXPb1.19;
DE Flags: Precursor;
GN Name=EXPB5; OrderedLocusNames=Os04g0552200, LOC_Os04g46650;
GN ORFNames=OSJNBa0010H02.8;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=9177257; DOI=10.1073/pnas.94.12.6559;
RA Cosgrove D.J., Bedinger P.A., Durachko D.M.;
RT "Group I allergens of grass pollen as cell wall-loosening agents.";
RL Proc. Natl. Acad. Sci. U.S.A. 94:6559-6564(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=11598238; DOI=10.1104/pp.010345;
RA Lee Y., Kende H.;
RT "Expression of beta-expansins is correlated with internodal elongation in
RT deepwater rice.";
RL Plant Physiol. 127:645-654(2001).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NOMENCLATURE.
RX PubMed=15604683; DOI=10.1007/s11103-004-0158-6;
RA Kende H., Bradford K.J., Brummell D.A., Cho H.-T., Cosgrove D.J.,
RA Fleming A.J., Gehring C., Lee Y., McQueen-Mason S.J., Rose J.K.C.,
RA Voesenek L.A.C.;
RT "Nomenclature for members of the expansin superfamily of genes and
RT proteins.";
RL Plant Mol. Biol. 55:311-314(2004).
CC -!- FUNCTION: May cause loosening and extension of plant cell walls by
CC disrupting non-covalent bonding between cellulose microfibrils and
CC matrix glucans. No enzymatic activity has been found. May be required
CC for rapid internodal elongation in deepwater rice during submergence
CC (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Secreted, cell wall {ECO:0000250}. Membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the expansin family. Expansin B subfamily.
CC {ECO:0000305}.
CC -!- WEB RESOURCE: Name=EXPANSIN homepage;
CC URL="http://homes.bio.psu.edu/expansins/";
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DR EMBL; AF261273; AAF72986.1; -; mRNA.
DR EMBL; AY039024; AAK84683.1; -; Genomic_DNA.
DR EMBL; AL606633; CAE01688.2; -; Genomic_DNA.
DR EMBL; AP008210; BAF15416.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS90391.1; -; Genomic_DNA.
DR RefSeq; XP_015635052.1; XM_015779566.1.
DR AlphaFoldDB; Q7XT39; -.
DR SMR; Q7XT39; -.
DR STRING; 4530.OS04T0552200-00; -.
DR PaxDb; Q7XT39; -.
DR PRIDE; Q7XT39; -.
DR EnsemblPlants; Os04t0552200-00; Os04t0552200-00; Os04g0552200.
DR GeneID; 4336602; -.
DR Gramene; Os04t0552200-00; Os04t0552200-00; Os04g0552200.
DR KEGG; osa:4336602; -.
DR eggNOG; ENOG502QPVQ; Eukaryota.
DR HOGENOM; CLU_027462_1_2_1; -.
DR InParanoid; Q7XT39; -.
DR OMA; VWRVNSN; -.
DR OrthoDB; 754048at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR Genevisible; Q7XT39; OS.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009653; P:anatomical structure morphogenesis; IEA:UniProt.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0019953; P:sexual reproduction; IEA:InterPro.
DR Gene3D; 2.40.40.10; -; 1.
DR Gene3D; 2.60.40.760; -; 1.
DR InterPro; IPR007118; Expan_Lol_pI.
DR InterPro; IPR007112; Expansin/allergen_DPBB_dom.
DR InterPro; IPR007117; Expansin_CBD.
DR InterPro; IPR036749; Expansin_CBD_sf.
DR InterPro; IPR005795; LolPI.
DR InterPro; IPR009009; RlpA-like_DPBB.
DR InterPro; IPR036908; RlpA-like_sf.
DR Pfam; PF03330; DPBB_1; 1.
DR Pfam; PF01357; Expansin_C; 1.
DR PRINTS; PR01225; EXPANSNFAMLY.
DR PRINTS; PR00829; LOLP1ALLERGN.
DR SMART; SM00837; DPBB_1; 1.
DR SUPFAM; SSF49590; SSF49590; 1.
DR SUPFAM; SSF50685; SSF50685; 1.
DR PROSITE; PS50843; EXPANSIN_CBD; 1.
DR PROSITE; PS50842; EXPANSIN_EG45; 1.
PE 2: Evidence at transcript level;
KW Cell wall; Cell wall biogenesis/degradation; Disulfide bond; Glycoprotein;
KW Membrane; Reference proteome; Secreted; Signal.
FT SIGNAL 1..24
FT /evidence="ECO:0000255"
FT CHAIN 25..275
FT /note="Expansin-B5"
FT /id="PRO_0000252016"
FT DOMAIN 63..173
FT /note="Expansin-like EG45"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DOMAIN 185..269
FT /note="Expansin-like CBD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00078"
FT CARBOHYD 28
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT DISULFID 66..95
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 98..168
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT DISULFID 103..109
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00079"
FT CONFLICT 207
FT /note="E -> K (in Ref. 1; AAF72986)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 275 AA; 28718 MW; 1DAD9EE07E8CD489 CRC64;
MVSRGTFVFA VLVALPILSL PVSGYEQNYT AGRRSTMSLG RGYGWSSGGA TWYGGPQGDG
SEGGACGYQS AVGQRPFSSM IAAGGPSLFK NGKGCGSCYQ IKCTGNRACS GRPVTVVITD
SCPGGVCLNE AAHFDMSGTA FGAMANRGMG DRLRSAGVLK IQYKRVPCRF AMNVAFKVDA
GSNPYYLAIL VQYANGDGDL AAVHIMEARG GGGWKAMQQS WGATWRLNSN TGKPLSPPFS
IRLTSGSGKV LVANNVIPSG WQAGLTYRST VNYAA
