AIL5_ARATH
ID AIL5_ARATH Reviewed; 558 AA.
AC Q6PQQ3; Q9FIE2;
DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot.
DT 12-JUN-2007, sequence version 2.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=AP2-like ethylene-responsive transcription factor AIL5 {ECO:0000303|PubMed:15988559};
DE AltName: Full=Protein AINTEGUMENTA-LIKE 5 {ECO:0000303|PubMed:15988559};
GN Name=AIL5 {ECO:0000303|PubMed:15988559};
GN OrderedLocusNames=At5g57390 {ECO:0000312|Araport:AT5G57390};
GN ORFNames=MSF19.5 {ECO:0000312|EMBL:BAB08476.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Pan Y., Gong W., Liu D., Fu Q., Mei W.-Q., Song W.-Q., Ma L.-G., Luo J.-C.,
RA Deng X.-W., Zhu Y.-X.;
RT "Molecular cloning, expression, phylogenetic and functional
RT characterization of the Arabidopsis AP2/EREBP transcription factor
RT family.";
RL Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10048488; DOI=10.1093/dnares/5.6.379;
RA Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence
RT features of the regions of 1,081,958 bp covered by seventeen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:379-391(1998).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP FUNCTION, TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
RX PubMed=15988559; DOI=10.1007/s11103-005-0955-6;
RA Nole-Wilson S., Tranby T.L., Krizek B.A.;
RT "AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may
RT specify meristematic or division-competent states.";
RL Plant Mol. Biol. 57:613-628(2005).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16407444; DOI=10.1104/pp.105.073783;
RA Nakano T., Suzuki K., Fujimura T., Shinshi H.;
RT "Genome-wide analysis of the ERF gene family in Arabidopsis and rice.";
RL Plant Physiol. 140:411-432(2006).
CC -!- FUNCTION: Probably acts as a transcriptional activator. Binds to the
CC GCC-box pathogenesis-related promoter element. May be involved in the
CC regulation of gene expression by stress factors and by components of
CC stress signal transduction pathways (By similarity). Involved in the
CC regulation of floral organs size (PubMed:15988559).
CC {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:15988559}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and
CC siliques. Also detected at low levels in leaves.
CC {ECO:0000269|PubMed:15988559}.
CC -!- DEVELOPMENTAL STAGE: Present in inflorescence meristem and later in
CC young floral mersitems. Expressed in sepal, petal, stamen and carpel
CC primordia. In petal, progressively confined to petal margin and
CC epidermal cells. Restricted to sporogenous tissue in the stamen and to
CC the medial ridge of the carpel. Present in tissues that develop from
CC this ridge, such as placenta and ovule primordia. In ovules, first
CC expressed in distal part of the funiculus and the outer integument,
CC before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. AP2
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB08476.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AY585685; AAS97942.1; -; mRNA.
DR EMBL; AB016891; BAB08476.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED96895.1; -; Genomic_DNA.
DR RefSeq; NP_200549.2; NM_125122.4.
DR AlphaFoldDB; Q6PQQ3; -.
DR BioGRID; 21089; 1.
DR IntAct; Q6PQQ3; 1.
DR STRING; 3702.AT5G57390.1; -.
DR PaxDb; Q6PQQ3; -.
DR PRIDE; Q6PQQ3; -.
DR ProteomicsDB; 244935; -.
DR EnsemblPlants; AT5G57390.1; AT5G57390.1; AT5G57390.
DR GeneID; 835845; -.
DR Gramene; AT5G57390.1; AT5G57390.1; AT5G57390.
DR KEGG; ath:AT5G57390; -.
DR Araport; AT5G57390; -.
DR TAIR; locus:2173009; AT5G57390.
DR eggNOG; ENOG502QR5R; Eukaryota.
DR HOGENOM; CLU_013549_5_0_1; -.
DR InParanoid; Q6PQQ3; -.
DR OMA; DYWSNIF; -.
DR OrthoDB; 455685at2759; -.
DR PhylomeDB; Q6PQQ3; -.
DR PRO; PR:Q6PQQ3; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q6PQQ3; baseline and differential.
DR Genevisible; Q6PQQ3; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0060774; P:auxin mediated signaling pathway involved in phyllotactic patterning; IGI:TAIR.
DR GO; GO:1990110; P:callus formation; IGI:TAIR.
DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0010311; P:lateral root formation; IGI:TAIR.
DR GO; GO:0060772; P:leaf phyllotactic patterning; IGI:TAIR.
DR GO; GO:0060771; P:phyllotactic patterning; IGI:TAIR.
DR GO; GO:0040019; P:positive regulation of embryonic development; IMP:TAIR.
DR GO; GO:0009791; P:post-embryonic development; IMP:TAIR.
DR GO; GO:0048364; P:root development; IMP:TAIR.
DR GO; GO:0009845; P:seed germination; IMP:TAIR.
DR CDD; cd00018; AP2; 2.
DR Gene3D; 3.30.730.10; -; 2.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR Pfam; PF00847; AP2; 2.
DR PRINTS; PR00367; ETHRSPELEMNT.
DR SMART; SM00380; AP2; 2.
DR SUPFAM; SSF54171; SSF54171; 2.
DR PROSITE; PS51032; AP2_ERF; 2.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Ethylene signaling pathway; Nucleus;
KW Reference proteome; Repeat; Transcription; Transcription regulation.
FT CHAIN 1..558
FT /note="AP2-like ethylene-responsive transcription factor
FT AIL5"
FT /id="PRO_0000290365"
FT DNA_BIND 203..269
FT /note="AP2/ERF 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT DNA_BIND 305..363
FT /note="AP2/ERF 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT REGION 1..65
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 74..93
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 166..195
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 387..406
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..56
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 74..89
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 13
FT /note="Missing (in Ref. 1; AAS97942)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 558 AA; 60306 MW; 3E215E06291CBD31 CRC64;
MKNNNNKSSS SSSYDSSLSP SSSSSSHQNW LSFSLSNNNN NFNSSSNPNL TSSTSDHHHP
HPSHLSLFQA FSTSPVERQD GSPGVSPSDA TAVLSVYPGG PKLENFLGGG ASTTTTRPMQ
QVQSLGGVVF SSDLQPPLHP PSAAEIYDSE LKSIAASFLG NYSGGHSSEV SSVHKQQPNP
LAVSEASPTP KKNVESFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG
GYDKEDKAAR AYDLAALKYW GPTTTTNFPI SNYESELEEM KHMTRQEFVA SLRRKSSGFS
RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT
NFDISRYDVK SIASCNLPVG GLMPKPSPAT AAADKTVDLS PSDSPSLTTP SLTFNVATPV
NDHGGTFYHT GIPIKPDPAD HYWSNIFGFQ ANPKAEMRPL ANFGSDLHNP SPGYAIMPVM
QEGENNFGGS FVGSDGYNNH SAASNPVSAI PLSSTTTMSN GNEGYGGNIN WINNNISSSY
QTAKSNLSVL HTPVFGLE
